Herbaspirillum sp. meg3: hmeg3_14050
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Entry
hmeg3_14050 CDS
T05024
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hee
Herbaspirillum sp. meg3
Pathway
hee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
hmeg3_14050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hee03019
]
hmeg3_14050
Enzymes [BR:
hee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
hmeg3_14050
Messenger RNA biogenesis [BR:
hee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
hmeg3_14050
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ASU39304
LinkDB
All DBs
Position
3136928..3138328
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AA seq
466 aa
AA seq
DB search
MSFSSLGLSEEIVRAVTEQGYTTPTPIQMQAVPAVLAGGDLLAGAQTGTGKTAGFTLPLL
QRLSSVERVKINGHVPIRALILTPTRELAAQVEESVRLYGKYLPLTSACIFGGVGINPQI
RQLKQGVDILVATPGRLLDHMQQNTVDLRNIQVLILDEADRMLDMGFIRDIKKILAILPK
KRQNLLFSATFSDEIKALADGLLNSPAMIEVARRNSTVEVIGQKIHPVDRDKKHPMLAHL
INTHKWTQVLVFTRTKHGANKLVEQLERDGITAMAIHGNKSQAARTRALAEFKDGKLQAL
IATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGSAVSLVCVDERDMLHD
IERFIKREIPVEIIPGFEPDPKAKPQPIQLRSGGGGGQRRQGGGGGGGGRSQQPKKPGAG
SGQGQQASAKPRQGGPAKPQGQGPAQNRGPAARPSASTHRSGGRGR
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtcattctcatctctcggtctttccgaggaaatcgttcgtgccgtaaccgaacagggc
tataccacgccaactccaattcagatgcaagctgtacctgcagtgctcgccggtggcgac
ttgctggcaggcgcacaaaccggcacgggtaagaccgccggtttcacgctgccgctgctg
caacgcttgtcgtcggtcgagcgcgtcaagatcaacggtcatgtgcctatccgtgcactg
atcctgactccgacacgtgaactggctgcgcaggttgaagaaagcgtccgcctgtacggc
aaatatctgccactgacttccgcatgcatcttcggcggcgtcggcatcaatccgcaaatt
cgccagctcaagcaaggcgtcgacattctggtcgcaacaccaggccgtctgctggatcac
atgcaacagaacaccgtcgacctgcgcaatatccaggttctgatcctggacgaagctgat
cgcatgctcgacatgggctttatccgtgacatcaaaaagatcctcgcgatcctgccgaag
aagcgtcagaacctgctgttctcggcgaccttctccgacgaaatcaaggcactggccgac
ggcctgctgaattcgccggcaatgatcgaagttgcgcgtcgcaactcgaccgtcgaagtg
atcggccaaaagatccacccggtcgatcgcgacaagaagcatccgatgctggcgcacctg
atcaacacgcacaaatggacgcaagtgctggtgttcacccgcaccaaacacggtgccaac
aagctggtcgaacaattggagcgcgacggcatcaccgccatggcgatccacggcaacaag
agccaggctgcccgcacccgtgcgctggccgagttcaaggacggcaagctgcaggcactg
atcgccaccgatatcgcagcacgcggcatcgacatcgatcaactgccgcacgtggtcaac
tatgatctgcccaacgtgccggaagactacgttcaccgtatcggccgtaccggccgcgcc
ggcgcaaccggctctgccgtgtcgctggtgtgcgtcgacgagcgcgacatgctgcacgac
atcgaacgcttcatcaaacgcgaaatcccggtcgaaatcattcctggttttgaacccgat
ccgaaggcgaaaccacagccgattcaactgcgcagcggcggtggcggcggtcaacgtcgc
caaggcggtggtggtggtggtggcggtcgctcgcaacaaccgaaaaaaccgggcgccgga
agtggtcaaggccagcaagcatcggccaagccgcgtcaaggcggccctgccaagccacaa
ggccagggtcctgcacaaaaccgcggacctgctgcacgtccttcggcatcgacacatcgc
tccggtggtcgcggcaggtaa
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integrated database retrieval system
