Herbaspirillum sp. meg3: hmeg3_14205
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Entry
hmeg3_14205 CDS
T05024
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hee
Herbaspirillum sp. meg3
Brite
KEGG Orthology (KO) [BR:
hee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hee03032
]
hmeg3_14205
03400 DNA repair and recombination proteins [BR:
hee03400
]
hmeg3_14205
Enzymes [BR:
hee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
hmeg3_14205
DNA replication proteins [BR:
hee03032
]
Prokaryotic type
DNA Topoisomerases
hmeg3_14205
DNA repair and recombination proteins [BR:
hee03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
hmeg3_14205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF7003
Motif
Other DBs
NCBI-ProteinID:
ASU39331
UniProt:
A0A223PBN8
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All DBs
Position
3171176..3172321
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AA seq
381 aa
AA seq
DB search
MHTQVHRDVACSPNSGSTPAVPNAKKIARESGLRYVNDDTPGISRRRDHGDFIYIDSDGE
TIHDSPLLARIKALAVPPAWEDVWICPWENGHIQATGRDARQRKQYRYHARWRIVRDEVK
YQRMVSFAQVLPQIRKCLEHDLKKPGLSKQKVLATVIYLLQATLMRVGNDEYARSNQSFG
MTTLRNRHVKVDGADIKFHFRGKSGVQHTIKLHDPYMVRIVRKLLDLPGQDLFQYVDEAG
DTHSIGSSDVNDYLHEITGEDYTAKDFRTWAGTVLAALALNEFQQFDSQAQAKKNIVQAI
EHVAMKLGNTPTICRKCYVHPDVISSYLDGVTAGTLKQQVRDNLVHDLHALSPEEAAVLA
LLQQRLQEEPKQGKSHKRQRS
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgcatacacaagtccatcgcgacgtggcctgctcaccaaactcaggctcaactccggct
gtgccaaacgcaaagaaaattgcccgggaaagtggtctgcgttacgtcaacgacgacacg
cccggcatcagccgcagacgagatcatggcgatttcatttatatcgatagcgacggcgag
accatccatgacagccctcttctcgcccgcatcaaggcgcttgcagtgccgcccgcctgg
gaagatgtgtggatatgcccgtgggagaacggccatatccaggccaccggacgcgatgcg
cgtcaacgcaaacaataccgctatcacgcgcgctggcgcatcgtgcgcgatgaagtcaaa
tatcaacgtatggtcagctttgcgcaggtgttgccgcagatacgtaaatgccttgagcac
gatctcaagaaacccggcctgagcaaacaaaaagtactcgcgacagtcatctatctgttg
caagccacactcatgcgtgtgggcaacgacgagtacgcgcgcagcaatcagtcattcggc
atgaccacgctgcgcaatcgccacgtcaaggtcgatggcgccgacatcaagttccatttt
cgcggcaagagcggcgtgcagcacacgatcaagctgcatgatccctacatggtgcgcatc
gtgcgcaagttgctcgatttgccgggacaggatttgtttcagtatgttgatgaagccggc
gacacacactccatcggctccagcgacgtcaacgactatctgcacgaaatcaccggcgag
gactacaccgccaaagatttccgcacctgggccgggaccgtgctggcagcactggcgctc
aacgagtttcagcagttcgactcacaggcgcaggcgaagaagaacattgtgcaggccatt
gagcacgtggccatgaagctgggtaatacgccgaccatctgccgcaaatgttacgtgcac
cccgacgtgatttcatcttatctggacggcgtcacggcgggcacgctcaagcagcaggta
cgcgacaatctggtccacgacttgcatgccttgagcccggaagaagctgccgtgctggcg
ctgcttcagcaacgcttgcaggaagaacccaagcaagggaaatctcacaaaagacagaga
agctaa
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