Herbaspirillum sp. meg3: hmeg3_17920
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Entry
hmeg3_17920 CDS
T05024
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
hee
Herbaspirillum sp. meg3
Pathway
hee03030
DNA replication
hee03430
Mismatch repair
hee03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
hmeg3_17920
03430 Mismatch repair
hmeg3_17920
03440 Homologous recombination
hmeg3_17920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hee03032
]
hmeg3_17920
03400 DNA repair and recombination proteins [BR:
hee03400
]
hmeg3_17920
Enzymes [BR:
hee01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
hmeg3_17920
DNA replication proteins [BR:
hee03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
hmeg3_17920
DNA repair and recombination proteins [BR:
hee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
hmeg3_17920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
DNA_pol3_gamma3
AAA
DNA_pol3_tau_5
RuvB_N
AAA_22
AAA_18
AAA_14
AAA_16
AAA_2
nSTAND3
TsaE
Herpes_Helicase
Glyco_tranf_2_5
AAA_assoc_2
AAA_28
AAA_19
Rad17
Motif
Other DBs
NCBI-ProteinID:
ASU39982
LinkDB
All DBs
Position
complement(3991780..3993834)
Genome browser
AA seq
684 aa
AA seq
DB search
MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK
SLNCVGADGNGGITAQPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAIYAP
SNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNL
KQMPPGHIISHLDNILGQENIEFEAPALRLLAQGAHGSMRDALSLTDQAIAYAAGKVTLE
AVQGMLGALDQSYLIRVLDALAVQDGAALLSVADEMATRSLSYNAALQDLATLLHQIALA
QTVPAALAEDVPQREDIMRLASQFNPEEAQLFYQIAVHGRNELGLAPDEYAGFSMTLLRM
LAFRPIAAGAAGAAGSAPAAPVARPSASAASGRATPAVAPLSAAPQVATASAPVSRSPVA
APAAPAAGPGNSARAAALEAARAASGKSSPRPAAAAPAPVPASAPAPVQAAPAAAPTVPP
AMASVSDDMPPPWDEEPASADAQKKTEQYSTGGANEDVSHAVLDNVENPIVVAPLAVAVS
PVTPAMQAQTAQVAAELGWDGNWPHLAAELPLRGMVQQMAQQSELVRCEQVGNAICFHLR
IPVETLRASGNVDKLAAVLSERFGKTVRVETEIGMVALTANAKAEADRAERQREAEQTVK
NDPFVQVMMREFGASIVPGSIRPL
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcctaccaagttctcgcccgcaaataccgcccccgcagcttcgatacgctggtgggg
caggagcacgtcgtgcgggcgctgacacatgcgttggaacagcagcgtttgcatcatgcc
tatttgttcaccggcacccgtggcgtgggcaagactaccttgtcccgtattctggccaag
tcgctcaattgcgtgggcgctgacggcaatggcggcattaccgcccagccttgcggcgtt
tgcgaagcctgtgttgccatcgatgccggtcgctttgtcgactatatcgaaatggatgcc
gcgtccaaccgcggcgtcgatgaaatggcgcagctgctggagcaggcgatttatgcgccg
tccaacgcccgcttcaaggtctacatgatcgacgaagtgcacatgctcaccaatcacgcc
ttcaactccatgctgaagacgctggaagagccgccggaacatgtcaagttcatcctggcg
acgaccgatccgcaaaaaattcccgtgaccgtgctgtcgcgttgcttgcagttcaatctg
aagcaaatgccgccgggccacatcatcagccacctggacaatatccttggccaggaaaac
attgaattcgaagctcctgcactgcgcctgctggcacaaggcgcacatggttccatgcgt
gacgccttgtcgctcacggatcaggcgattgcctacgccgccggcaaagtgacattggaa
gccgtacagggcatgctcggtgcgctcgatcagtcttatctgattcgcgtgttggatgcg
ctcgctgtgcaagacggtgcagcactgctgtcggtcgccgatgaaatggccacccgcagc
ctctcgtataacgccgccttgcaggatctggcgacgctgctgcatcagatcgctttggcg
caaactgtccccgctgcgttggcggaagatgtgccgcagcgcgaagacatcatgcgtctt
gcctcccaattcaatcctgaagaagcgcaactgttttatcagatcgctgttcacggccgc
aatgaactgggtctggcaccggatgaatatgcgggctttagcatgactttgttgcgtatg
ctggctttccgtccgatcgctgccggtgctgccggagccgctggcagtgcacccgcagcg
cctgtcgcaagaccatcagcttccgcagcgtcaggcagagcgacgcctgccgttgctccg
ctgagtgctgcgccgcaagtcgctaccgccagtgcacctgtttcccgttcaccggttgcc
gcacccgctgcacctgccgcgggccctggaaattccgcgcgcgcagcagcgttggaggct
gcccgggcggcgtcaggaaagagttcaccgcgtcccgctgcagcagcacctgcacccgtg
ccagcttctgctcccgcaccggttcaggccgcacctgcagcagcaccgacagttcctccg
gcgatggcaagcgtgtccgacgacatgcctcctccttgggatgaagagccggctagtgcc
gacgctcaaaaaaaaactgaacagtattcaacaggcggcgcaaacgaagacgtaagtcat
gctgtactcgacaatgtcgaaaatccgatcgtcgttgcaccgctcgcggtagcggtcagc
cccgttacaccggcaatgcaggcgcagactgcgcaagttgccgccgagctcggctgggac
ggcaattggccgcacctggctgccgaattgccgctgcgcggtatggtgcaacagatggct
caacagagtgaactggtgcgatgcgaacaagtcggcaacgccatctgtttccatttgcgc
attccggtagaaactttgcgtgcttcaggtaatgtcgacaagttggctgccgttctgagc
gagcgctttggtaaaacagtcagagtagaaactgaaatcggcatggtggcgctcaccgcc
aatgccaaagcagaagccgatcgtgccgaaaggcaacgcgaagcggagcagaccgtgaaa
aacgacccgtttgtgcaagtcatgatgcgcgagtttggcgcatctatcgtacctggctcg
atccggccgttatag
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