Herbaspirillum sp. meg3: hmeg3_18505
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Entry
hmeg3_18505 CDS
T05024
Name
(GenBank) cryptochrome/photolyase family protein
KO
K06876
(6-4)DNA photolyase [EC:
4.1.99.13
]
Organism
hee
Herbaspirillum sp. meg3
Brite
KEGG Orthology (KO) [BR:
hee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hee03400
]
hmeg3_18505
Enzymes [BR:
hee01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.13 (6-4)DNA photolyase
hmeg3_18505
DNA repair and recombination proteins [BR:
hee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
Direct repair
hmeg3_18505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DPRP
Glyco_trans_4_4
Motif
Other DBs
NCBI-ProteinID:
ASU40083
UniProt:
A0A223PD85
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All DBs
Position
complement(4103160..4104713)
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AA seq
517 aa
AA seq
DB search
MEPRVTSRTCTLRLILGDQLNTEHSWFQIVDPHVVYVLMEVRQETDYVLHHAQKILAIFA
AMRDFARHLRAAGHRVRYVALDDQSNRQSITENLEAMMRRYDAERLEWQLPDEWRLDALL
RTWAAQQQFATTEVDSEHFLTSRNEMAQLYAGRKQWLMEHFYRHMRRRFTLLVDAQGKPE
GGQWNFDHDNRKPWPGTPAEPVDTRPTHDHQDLWEWLQRCGVSSFGDPQAMQMRWPLNRK
EALMCLETFINTTLPHFGDFEDAMSSKSQRLFHSLLSFALNVKMLHPLEVVRSAEQAYRN
GTAPLAAVEGFIRQIVGWREYVRGIYWAHMPGYDERNTLGHELPLPSWFWTGDTTMRCMH
HAIGQSLQTAHAHHIQRLMVIGNFSLLAGLDPQALHRWYLGVYIDAFEWVELPNTLGMSQ
WADGGLIATKPYVSSGAYIQRMSDYCQGCRYDPKQKLGDDACPFSALYWDFFARHEPLLR
NNTRLGMVYKQLQKMQGDQLDALRTRAMDVRARLEQL
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggagcctcgcgtgacaagccgtacttgcaccttgcgtctgatcctcggcgaccagctc
aacactgagcactcgtggtttcagatcgtagatccccacgtcgtctatgtactcatggaa
gtgcgtcaggaaactgactacgtactgcatcacgcacaaaaaattctagctatctttgct
gcgatgcgtgacttcgcgcgtcatctgcgcgcggcaggtcaccgggtacgatacgtggcg
cttgacgatcagagcaacagacaatccatcacggaaaatctggaggcaatgatgcgacgc
tacgatgccgagcgcctggaatggcagttgccagacgaatggcgactggatgctctgctt
cgtacatgggctgcgcaacagcaatttgccacgacagaagtcgacagtgaacattttctg
acatctcgaaacgaaatggcccagctgtacgcaggccgcaagcaatggctgatggagcat
ttctatcgccacatgcgccgccgctttacgttgcttgtagatgcgcaaggcaagccggaa
ggcgggcaatggaactttgatcacgataaccgcaagccttggccgggaacgccggcggag
ccggtagatactcgtccgacccatgaccatcaggacctgtgggagtggttgcagcgctgc
ggtgtgagcagctttggcgatccgcaggcaatgcagatgcgctggcccttgaatcgcaag
gaggcgctgatgtgtctggagacatttatcaacactacgcttcctcattttggcgacttt
gaagatgccatgagcagcaagagccaacgcctgtttcactcgctgctgtcgtttgcgctg
aacgtcaaaatgcttcatccgcttgaagtggtgcgcagcgcagaacaagcctaccgcaac
ggtactgcgccgttggcggcagtggaggggtttatcaggcagattgtcggttggcgggaa
tatgtgcgcggcatttattgggcccacatgccaggctatgacgagcgcaatacgctcggt
cacgagctgcccctgccaagctggttctggactggcgatacgacgatgcgctgcatgcac
catgccatcggtcagtcgttgcagactgcacacgcccatcacattcagcgcctgatggtg
atcggtaatttttcgctgctggccggacttgatccgcaggcgctgcatcgctggtattta
ggtgtgtatatagacgccttcgagtgggttgagctacctaacactctgggtatgagccaa
tgggcggatggcggtcttattgcgaccaagccctatgtcagtagcggtgcgtacattcaa
cgcatgagcgattactgccaaggctgccgatacgatccgaaacaaaaactcggcgacgac
gcgtgcccgttcagcgcgttgtactgggattttttcgcgcgtcatgaaccgttgctgcgc
aacaatacgcgtttaggcatggtgtataagcaactccaaaaaatgcaaggggatcagctg
gatgcgctccgtacccgtgctatggatgttcgggctcgtcttgagcagctttag
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