Herbaspirillum sp. meg3: hmeg3_18950
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Entry
hmeg3_18950 CDS
T05024
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hee
Herbaspirillum sp. meg3
Pathway
hee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
hmeg3_18950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hee03019
]
hmeg3_18950
Enzymes [BR:
hee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
hmeg3_18950
Messenger RNA biogenesis [BR:
hee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
hmeg3_18950
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_19
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASU40159
UniProt:
A0A223PDK6
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All DBs
Position
complement(4210452..4211963)
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AA seq
503 aa
AA seq
DB search
MPEQLPETAVPEMPEVRFEDFGLSPDILKALSEQGYTHPTPIQAQAIPIVLQGRDVMGAA
QTGTGKTAGFSLPIIQLLLAHASTSMSPARHPVRALILTPTRELADQVAENVKAYSRFTP
LRSTVVFGGVDMAPQTATLRGGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLD
MGFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLAASFQNNPVTIEVARSNATAERVTQT
IYKVDEDAKSDAVAHIIRERQLKQVIVFSNTKIGASKLARQLENDGVKASAIHGDKSQGE
RMAALEAFKQGQVEVLVATDVAARGLDITDLPCVINIDLPYNAEDYVHRIGRTGRAGASG
DAISLFSDKDERLLVDIEKLIKIKFVRSELTGFVPRQRGERGERSERGERSDRGDRGDRS
NSSSRSNSSGGDRVSAPRDTQSYGRSSSSPRKEKVDPWFLKPYEPTSAPSPAEANAVAAK
PLSSKPPKHKVAALLGGMPKRQA
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagcaattgcctgaaacagcagtacctgaaatgcctgaagtccgttttgaagac
tttggcctgtcgcccgacatcctgaaggcgctgtcggagcaggggtacacccatccgaca
ccgattcaggcgcaggcgattcctatcgtgttgcaagggcgcgatgtcatgggcgccgca
cagaccggcaccggcaagacggccgggttctcgttgccgatcattcaattgttgctggca
catgccagcaccagcatgtctccggcgcgtcatccggtgcgcgcgttgattctgacgccc
acgcgtgagctcgccgatcaggttgcggaaaacgtcaaagcgtattcgcgcttcacgccg
ttgcgctccacggtcgtgttcggtggtgtcgatatggcgccgcagacagcgactttgcgc
ggcggtgttgaaatcgttatcgccacgccgggccgcctgctggatcacgttcagcaaaag
accgtgaacctctcgcagacccagatcctggtcatggacgaagccgaccgcatgctggac
atgggtttcctgccggatttgcagcgcatcatcaacctgctgccgaagcaacgccagaac
ctgatgttctcggcgaccttctcgccggaaatcaagaagctggccgccagcttccaaaac
aatccggtcaccatcgaagtggcacgcagcaacgccaccgccgagcgcgtgacccagacc
atttacaaagttgacgaagacgccaagagtgacgccgtcgcgcacatcatccgcgagcgt
cagctcaagcaggtgatcgtgttttcgaataccaagatcggcgcttccaaactggcgcgc
cagctggaaaacgacggcgtcaaagcctccgcgatccatggcgataaatcccagggtgag
cgcatggccgcactggaagccttcaagcaaggccaggtcgaagtactggtggcgactgac
gtcgctgcgcgcggtctggatatcaccgatctgccgtgcgtaatcaatatcgatctgccg
tacaacgcggaagattatgtccaccgtatcggccgtaccggccgtgcgggtgcgtcggga
gatgcgatttcgctgttctccgacaaggatgagcgcctgctggtcgatatcgaaaagctg
atcaagatcaagttcgtgcgttcggagctgacaggtttcgtgccacgtcagcgtggtgaa
cgcggtgaacggtcggaacgtggcgaaagaagtgatcgcggcgaccgtggtgaccgcagc
aatagcagcagccgtagcaacagcagcggtggcgatcgtgtcagcgcaccacgtgatacg
caatcctatggacgcagcagcagctcgccgcgcaaggaaaaagtcgatccatggttcctc
aagccgtacgagccaacttctgcgccatcgccggcggaagccaatgcagtcgctgccaaa
ccattgagcagcaagccaccgaagcataaagtcgcagctttgctgggcgggatgcccaag
cgtcaggcttaa
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