Herbaspirillum sp. meg3: hmeg3_19485
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Entry
hmeg3_19485 CDS
T05024
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hee
Herbaspirillum sp. meg3
Pathway
hee02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hee00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
hmeg3_19485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hee03021
]
hmeg3_19485
Transcription machinery [BR:
hee03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
hmeg3_19485
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SH3-A_UBE2O
Motif
Other DBs
NCBI-ProteinID:
ASU40256
LinkDB
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Position
complement(4331116..4333707)
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AA seq
863 aa
AA seq
DB search
MANAMKKTAKTPTPSAKNIKPATKPASKSTPSVSVTRSVPKKAAVAKPIGKVAATAVKAV
TSPAKAATAAAAKKSSAKTAPKAVRAAAPVVAKPAAKATATPTKKNLSEANVKTASVQSK
ASVTTKKPEPKTAKPAAKAAAKSEAKDVSVMIAPGVSQTTDAAVLAAIDTSGYILPSVKV
PGRRGRKPKEFQPENDEIAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEATE
EELERRRQKLKTLIKQGKERGYLTFSEINDHLPENIVDPEAIEGIIGTFNDMGISVYEHA
PDAETLLLSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREG
EIEIAKRIEDGLKDMIQAISACPTTIAEILVAADKIKNDEIKVDEIVDGLVDMSEGEVVV
AAAASDEEEDEEDEEDEEEEEEEGESSGSGAAGFSAEQLEQLKRDALGKFATISTQFDNM
RKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKVVEKLCDTLRAQVDQVRQIERQILDVA
VNKCNMPRAHFIKVFPGNEINLDWVDGEVSANHGYSVVLSRNVPAIKELQQKLIDLQARV
VLPLPDLRGINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIG
LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQIL
QETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAP
ADAALHASMRGVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIE
AKALRKLRHPSRSDKLKSFLEGN
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatgcaatgaagaaaaccgcaaaaactccgacaccttccgcaaaaaacatcaag
ccggccaccaagccggcaagtaaatcgaccccttcggtatctgtaacacgatcggtccca
aagaaagcagctgttgcaaagcccatcggcaaagtagcagcaacggcagtaaaggcggta
acgtcgccagcgaaagctgcaacggcagcggcggcgaaaaaatccagtgccaaaactgct
cccaaagcggttcgcgctgcagcgccagtggtagccaaaccggcagccaaagcgactgcg
acgccaacgaagaagaacttatctgaagccaacgtaaagacggcttctgtgcaatcgaaa
gcttctgtgacaaccaagaaacctgaaccgaaaaccgctaagcctgccgccaaagcagca
gccaagagcgaagccaaagacgtcagcgtcatgatcgcgcctggcgtaagccaaacgact
gatgccgctgtactggcagccattgacacgtccggctacattttgccgtccgtcaaggtg
cctggccgccgtggccgcaagccaaaggaattccagcctgagaacgacgaaatcgccgcg
ctgaacgcggttgagcgcgccgaacttaaagctgtcgacaaagccaaagccaaggaccgc
aaggccaaggaaaaggctctgctgaaagacgcgttctcgtccgacacagaagcaaccgaa
gaagaactcgaacgccgtcgtcaaaagctcaagaccctgatcaaacaaggtaaagagcgc
ggctacctgaccttctccgaaatcaacgatcacctcccggaaaacatcgtcgatccggaa
gcaatcgaaggcatcatcggcacgttcaatgacatgggtatctccgtgtatgaacacgcg
cctgatgcggaaacattgctgctgtccgacaacgtcgccaacgtcgccagcgacgacgac
gctgaagccgctgccgaagcagcgctgtcgaccgtcgactccgatttcggccgtaccacc
gatccagtgcgtatgtacatgcgcgaaatgggctcggtcgaactgctgacccgcgaaggc
gaaatcgaaatcgccaagcgtatcgaagacggcttgaaggacatgatccaggcgatctcg
gcttgcccgaccaccatcgctgaaatcctggttgctgccgacaagatcaagaacgacgaa
atcaaggtcgacgaaatcgtcgacggtctcgtcgacatgagcgaaggcgaagtcgttgtc
gccgctgctgcgtctgacgaagaggaagacgaagaagacgaagaggacgaagaagaagag
gaagaagaaggcgaaagcagcggttccggtgcagccggcttctccgctgaacagctggaa
cagctcaagcgcgatgcgctgggcaagttcgcgaccatctcgacccaattcgacaacatg
cgcaaagccttcgaaaaagaaggctacaactcgaagccgtacgtcaaggcgcaggaaatc
atttccaacgagttgctgggcatccgcttcaccgccaaagtcgttgaaaagctgtgcgac
accttgcgtgcacaagttgatcaagtgcgtcagatcgaacgtcagatcctcgacgtcgcc
gtcaacaagtgtaacatgccgcgcgcgcacttcatcaaggttttccccggcaacgaaatc
aacctggactgggttgatggcgaagtcagcgccaaccacggttacagcgtcgtgctgagc
cgtaacgttcctgccatcaaagaactgcaacaaaagctgatcgacctgcaagcgcgcgtc
gtgttgccgctgccagacctgcgcggcatcaacaagaagatgggcgccggcgagaagaag
gcccgcatggccaagcgtgaaatgaccgaggccaacctgcgtctcgtgatctcgatcgcc
aagaagtacaccaaccgcggcctgcaattcctggatctgatccaggaaggcaacatcggc
ctgatgaaggcagtggacaagttcgaataccgtcgcggctacaagttctcgacctatgcg
acatggtggattcgccaggcaattacccgttcgatcgccgaccaggcgcgcactatccgt
attccggtgcacatgatcgaaaccatcaacaagatgaaccgcatctcgcgtcagatcctg
caagaaaccggtgcagaacctgatccggcaacgctggccatcaagatggaaatgccggaa
gacaagatccgcaagatcatgaagatcgccaaagagccgatctccatggaaacgccgatc
ggtgacgacgatgattcgcatctgggcgacttcatcgaagacaacaacacattggccccg
gccgatgcagcgttgcacgcctcgatgcgcggtgtcgtcaaagacatcctcgactccctg
acaccacgcgaagccaaagtgctgcgcatgcgtttcggtatcgaaatgtcgaccgaccac
acgctggaagaagtcggcaagcaattcgacgtcacccgcgagcgtatccgtcaaatagaa
gcaaaagcgctgcgtaagctgcgccatccatcacgctccgacaagctcaagagcttcctg
gaaggtaactaa
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