Herbaspirillum sp. meg3: hmeg3_20870
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Entry
hmeg3_20870 CDS
T05024
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hee
Herbaspirillum sp. meg3
Pathway
hee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
hmeg3_20870 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hee03019
]
hmeg3_20870 (recQ)
03400 DNA repair and recombination proteins [BR:
hee03400
]
hmeg3_20870 (recQ)
Enzymes [BR:
hee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
hmeg3_20870 (recQ)
Messenger RNA biogenesis [BR:
hee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
hmeg3_20870 (recQ)
DNA repair and recombination proteins [BR:
hee03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
hmeg3_20870 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ASU40508
UniProt:
A0A223PFB5
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All DBs
Position
complement(4635151..4637013)
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AA seq
620 aa
AA seq
DB search
MSEIVSEPVSERVQEQQSKALHILETVFGYSSFRGQQAEIVQHVVQGGDALVLMPTGGGK
SLCYQVPALVRDGVGVVVSPLIALMQDQVDALAEVGVRAAFLNSTQTFDEAMQIERRVRS
GDLDVLYVAPERLMTPRCLDLLEAAHISLFAIDEAHCVSQWGHDFRPEYIKLSVLHERFP
NVPRIALTATADQQTREEIIHRLQLEDARQFVSSFDRPNIRYQIVEKANGRKQLLDFIES
EHPDDAGVVYCLSRKKVEETAEFLKQSGINALPYHAGMDYAKRTANQSRFLREDKIVMVA
TIAFGMGIDKPDVRFVAHLDLPKSIEGYYQETGRAGRDGLPANAWMAYGLQDVVQQRRMI
AESEADETFKRVLGVKLDAMLGLCETLHCRRVRLLDYFGQHGQQACGNCDICLSPPVSFD
GTLMAQKLLSTVYRVEQRFAAGHVLDVLRGIDGERVKQWRHDQLSVFGIGSEYGEAEWRA
VLRQVIALGLLTVDHENYSSLKLTEEAKPVLRGEQKIQLRQYQKPVKPKRTSSKSNYTET
DLSTEEQTLFDKLRWWRVETARKHNVPAYVIFHDATMREIAKAKPSSLDDLRGVTGVGEK
KLETYGTEIIALIQEISGNF
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaattgtgtcagagccggtgtcagagcgggttcaggagcagcaatccaaagcg
ctgcacatcctcgaaaccgtattcggctattcgtccttccgcggccagcaggcggagatc
gtccagcatgtcgtgcagggcggcgacgcgctggtgctgatgccgaccggcggcggcaag
tcgctgtgctatcaggtgccggcgctggtgcgtgatggcgtgggtgtggtggtgtcaccg
cttatcgcgctgatgcaggatcaggtcgacgcgctggccgaagtcggcgtgcgcgcagcc
ttcctcaactcgacgcagaccttcgatgaagcgatgcagatcgagcgacgtgtacgcagc
ggcgatctcgacgtcttgtacgtggcgccggaacgtctgatgacgccgcgctgcctcgac
ctgctggaagcggcgcacatctcgctgtttgccatcgacgaggcgcactgcgtgtcgcaa
tggggccacgacttccgtcccgaatacatcaagctgtcggtgctgcacgagcgctttccc
aacgtgccgcgcatcgcactgacggccaccgccgaccagcagacccgcgaagaaatcatc
catcgcctgcagctcgaagatgcacgccagttcgtgtcgtccttcgaccgtcccaacatc
cgctatcagatcgtcgaaaaggccaacggccgtaagcagttgctcgacttcatcgagagc
gagcatcccgacgacgccggcgtggtgtactgcctgtcgcgcaagaaggtcgaagagacc
gccgaatttctcaagcagagcggcatcaacgcgctgccgtatcacgccggcatggactac
gccaagcgtaccgccaaccagtcgcgcttcctgcgggaagacaagatcgtcatggtcgcc
accatcgccttcggcatgggcatcgacaagccagacgtgcgctttgtcgcccacctcgat
ttgccaaagagcatcgaaggctactatcaggaaaccggccgcgccggccgtgacggttta
cccgccaacgcctggatggcttacggcttgcaagacgtggtgcaacagcgccgcatgatc
gccgagtccgaagccgacgaaaccttcaagcgcgtgctcggcgtcaagctcgacgccatg
ctcggcctgtgcgagaccctccattgccgccgcgtgcgcttgctcgactatttcggccag
catggccagcaagcctgcggcaactgcgacatctgcctgtcgccgccggtctctttcgac
ggcacgctgatggcgcaaaaactgttgtcgaccgtctaccgcgtcgaacagcgctttgcc
gccggccacgtgctggatgtcttgcgaggcattgatggcgagagggtcaagcaatggcgc
cacgaccagttatcggtgttcggcatcggcagcgagtatggcgaagccgaatggcgcgcc
gtgctgcgccaggtcatcgcactcggtttgctgaccgtcgaccatgaaaactacagctcg
ctcaaactgaccgaagaggccaagccggtgttgcgcggcgagcaaaaaatccagctgcgc
caatatcagaagccggtcaaaccaaaacgcacgtcgtccaaatccaactacaccgaaacg
gatctgtcgaccgaagaacaaacgctctttgacaagctgcgctggtggcgtgtcgagact
gcgcgcaaacacaacgtgccggcctacgttattttccacgacgccaccatgcgcgaaatc
gccaaagccaagccgtcatcgctcgacgatctgcgtggcgtcaccggcgttggcgaaaag
aaactggaaacttacggtacggaaattatcgccctcattcaggaaatatcaggaaatttc
tga
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