Herbaspirillum sp. meg3: hmeg3_21445
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Entry
hmeg3_21445 CDS
T05024
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
hee
Herbaspirillum sp. meg3
Pathway
hee03030
DNA replication
hee03410
Base excision repair
hee03420
Nucleotide excision repair
hee03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
hmeg3_21445
03410 Base excision repair
hmeg3_21445
03420 Nucleotide excision repair
hmeg3_21445
03440 Homologous recombination
hmeg3_21445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hee03032
]
hmeg3_21445
03400 DNA repair and recombination proteins [BR:
hee03400
]
hmeg3_21445
Enzymes [BR:
hee01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
hmeg3_21445
DNA replication proteins [BR:
hee03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
hmeg3_21445
DNA repair and recombination proteins [BR:
hee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
hmeg3_21445
NER (nucleotide excision repair)
GGR (global genome repair) factors
hmeg3_21445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
ASU40607
UniProt:
A0A223PEX0
LinkDB
All DBs
Position
complement(4761351..4764146)
Genome browser
AA seq
931 aa
AA seq
DB search
MQKTLLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYIACIFDA
KGKTFRDDLYTEYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLGLR
AAEEGLKTIVSTGDKDMAQLVNDHVTLVNTMSNETMDRAGVIGKFGVPPERIVDYLSLIG
DTVDNVPGVEKCGPKTAVKWLTQYDSLDGVMANADKITGVVGENLRKALPWLPQARVLVT
IKTDCDLSAHMGTILDSLTVQPNDNAALREIFTRYNFRTWLRELDAAEGAAAGSASAAAG
ASSASSSAAVGTDVSTGPAQVGLFDTSAAIVKEYETVLTEAQLDAWIEKINAAVLTAVDT
ETTSLVPMQAQLVGISLCCEPGRAAYIPVAHNYQDVPAQLPRELVLNKLKPWLEDESKPK
LGQNLKYDSHIFANQGVQLRGIVHDTLLESYVFESHRTHDMDSLALRHLNRTTISYVDVC
GKGASQITFDQVEISRAAEYAAEDADVTLALHHAMWPQIEHDAKLRYIYEKIEVPTSVVL
QKIERNGVLIDADILATQSGELGKRMLEIEQQAYELAGQPFNLNSPKQLGEILFEKLQLP
VVKKTPSGTPSTDEEVLQKLAEDYPLPKILLDYRGLSKLKSTYTDKLPKMVDPTTGRVHT
NYAQAVAVTGRLASNDPNLQNIPIRTAEGRRIREAFIAPPGSTIVSADYSQIELRIMAHI
SEDANMLKAFADGEDIHRATAAEIFGVGLSDVTSEQRRYAKVINFGLIYGMSAFGLAGNL
GIERAAAAMYIDKYFQRFSSVKQYMDNTRLEAKSQGYVETVFGRRLWLPEINSPNGPRRQ
GAERAAINAPMQGTAADLIKLAMIAVQGWLERDGMKSKLIMQVHDELVMEVPDDELAIVR
EKLPELMKNVADLKVPLLAEVGIGKNWDEAH
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaaccttgttgttagttgatggttccagttacctctatcgtgcatttcatgcc
ttgccagatatgcgtaacgcggaaggcgcgccgaccggtgcgttgtacggcatcatcaat
atgttgcgccgactgcgtaatgattatcctgcaagttacatcgcttgtatattcgacgcc
aagggaaaaacgtttcgtgacgacttgtataccgagtacaaggctacacgcaaatccatg
cctgaggacctggcgttgcaaatcgagccgattcacgccgccgtgcgcgccttgggctgg
cccattctgatggttgaaggcatcgaagccgatgacgtcatcggtacgctgggcttgcgc
gccgctgaagaaggactcaagaccatcgtctccaccggcgacaaggacatggcgcaactg
gtcaacgatcacgtcacgctggtcaacaccatgagcaacgaaaccatggaccgcgccggt
gtcatcggtaaattcggcgtaccgccggaacgcatcgtcgactacctcagcctcatcggc
gacactgtcgacaacgtgcccggcgtcgaaaaatgcggccccaaaaccgccgttaaatgg
ctcacccaatacgactcgctcgacggtgtcatggccaatgccgacaagatcaccggcgtg
gtcggcgagaacctgcgcaaggctctgccgtggctgccgcaggcgcgcgttctggtgacc
atcaagaccgactgcgatctgtcggcgcatatgggcaccattcttgattcgctcaccgtg
cagccgaatgacaatgccgcgctgcgcgagatcttcactcgctacaacttccgcacctgg
ctgcgcgagctcgacgctgcagaaggcgctgccgccggctccgctagtgctgctgctggt
gcttcttccgcatcctcatcggccgcagtcggcaccgatgtctccaccggtcctgcgcaa
gtcggtctatttgacaccagtgccgccatcgtcaaagaatacgaaaccgttctgaccgaa
gcgcagctcgacgcgtggatagaaaaaatcaacgccgccgtgcttacagcagtggacacc
gagacgacctcgctggttcccatgcaagcacagctggtgggtatctccttgtgctgcgaa
ccgggccgcgctgcgtacattcctgtcgcgcacaattatcaggacgtgcccgcgcaactg
ccacgcgagctggtactgaacaagctcaagccatggctggaagatgagagcaagcccaag
ctggggcagaacctcaaatacgatagtcacatcttcgccaatcagggcgtgcaattgcgt
ggcatcgtgcacgacacgctgttggaatcctacgtctttgaatcgcaccgcacccacgac
atggacagcctggcgctgcgtcacctcaatcgcaccacgatcagctacgttgatgtgtgc
ggcaagggcgcgtcgcaaatcactttcgatcaggttgaaatcagccgtgccgccgaatac
gccgccgaagacgccgacgtcacgctggccttgcatcacgccatgtggccgcagatcgaa
catgacgccaagctgcgctacatatacgagaaaatcgaggtaccgacctctgtcgtgttg
caaaagattgagcgcaacggcgtgctgatcgatgccgacatcctggcgacgcaatccggc
gaacttggcaagcgcatgctggagatcgaacagcaggcttatgaactggcaggtcagccg
ttcaatttgaattcacccaaacagctgggcgaaatcctgtttgagaaattgcaattgccc
gtcgtcaaaaagacgccctccggcacgccgtctactgatgaagaagttctgcaaaagctg
gcggaagattatccactgccgaagatcctgctcgactatcgtggcctgtccaaactgaag
tccacctacaccgacaagctgcccaagatggtcgacccgaccaccggccgcgtgcatacc
aactacgcacaagccgttgcggtgacaggacgtctggcatccaacgatcccaatctgcaa
aacattccgatccgcaccgccgaaggccgacgcatccgcgaagctttcattgcgccaccg
ggcagcacgattgtttccgccgactattcgcaaattgaattgcgcatcatggcgcacatc
tctgaagacgcgaacatgctcaaagccttcgccgatggcgaagacattcatcgcgccacc
gcagccgaaatctttggcgtgggtttgagcgacgtcaccagcgagcagcgccgctacgcc
aaagtcatcaacttcggcctgatctacggcatgagcgccttcggcctggccggcaacctg
ggcatcgaacgtgccgcggcggcgatgtacatcgacaagtatttccagcgcttctccagc
gtcaagcaatacatggacaacacgcgcctcgaagccaagtcgcaaggttacgtggagacc
gtcttcggtcgccgcctgtggctgccggaaatcaattcgcccaatggtccgcgccgtcag
ggggcagagcgtgcggcgatcaatgcgcctatgcagggaactgccgccgatctgatcaaa
ctggcaatgatcgctgtgcaaggctggctggagcgtgacggcatgaagtcaaaactcatc
atgcaggtgcacgatgaactggtcatggaagtgccggacgacgagctcgccatcgtgcgt
gaaaaattacctgaactgatgaaaaatgttgcggacctgaaggtgcctttgctagccgaa
gtagggatcggcaaaaactgggacgaagcccattaa
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