Herbaspirillum sp. meg3: hmeg3_22900
Help
Entry
hmeg3_22900 CDS
T05024
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hee
Herbaspirillum sp. meg3
Pathway
hee03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hee00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
hmeg3_22900 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hee03021
]
hmeg3_22900 (rpoC)
03400 DNA repair and recombination proteins [BR:
hee03400
]
hmeg3_22900 (rpoC)
Enzymes [BR:
hee01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
hmeg3_22900 (rpoC)
Transcription machinery [BR:
hee03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
hmeg3_22900 (rpoC)
DNA repair and recombination proteins [BR:
hee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
hmeg3_22900 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ASU40870
LinkDB
All DBs
Position
complement(5075257..5079495)
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVQQNEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFTAFM
GAEGIRELLRSIDIDRDAETLRVELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINAKNEGMLFQDVSEVIRAYDNK
EVELATRVTVRIVENPKDPVTGEFVRTVKRYETTVGRAILSEILPKGLPFSVLNRALKKK
EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATIIATAES
EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDDVGKAMMDQLKVEDVVRRDGTKGTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGASMKAMVEGGEVIEALRDRI
LGRVAATDIINPETQATLYEAGTLMDEDTVEEVERLGIDEVKVRTPLTCDTRYGLCAKCY
GRDLGRGVLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTIR
FTATMRYVTNGKGELIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGMVIKAGTALA
TWDPLTRPIITEYTGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGSSAAKVLRPQ
VKLLNEQGEEVKIAGTEHAVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGG
LPRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGAKHEFLITKDKQVLV
HDGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVR
QMLRRVQVVDPGDTNYITGEQVERSELLDENDRVNAENKIPATYENVLLGITKASLSTDS
FISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAD
ERAALLESERQARVTETEAHSTETFGGADGEA
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagttcagcaaaacgaacaattcgacgcgatc
aaaattggtctggcgtccccggaaaaaatccgttcgtggtcctacggcgaagtcaaaaag
ccggaaaccatcaactaccgtaccttcaagcctgagcgcgacggtctgttctgcgccaag
atctttggcccgatcaaagactacgaatgcctctgcggcaagtacaagcgcctgaagcac
cgcggcgttatctgcgaaaaatgcggcgttgaagtcacgctggccaaagtgcgccgtgag
cgcatgggtcacatcgaactggcttcgccaactgcacacatctggttcctgaaatcgctg
ccgtcgcgtctgggtatggttctcgacatgaccctgcgcgatatcgaacgcgtgctgtac
ttcgaagcctacgtcgtgaccgatccaggcatgactccgctgaagaagtgccagatcatg
tcggaagacgactacgccgccaagtacgaagagtacggcgacgacttcaccgcattcatg
ggcgccgaaggcatccgtgaactgttgcgctcgatcgacatcgaccgcgatgcagaaacc
ctgcgcgtggaactgaaagaatcgaagtccgaagccaagatcaagaaatacgccaagcgt
ctgaaggttctggaagcgttccagcgttcgggcatcaagcctgactggatgatcatggaa
gtgctgccggtgctgccaccggaattacgcccactggttccgctggacggcggtcgcttt
gcgacttccgatctgaacgatttgtatcgtcgcgtcatcaaccgtaacaaccgcctgaag
cgcctgatggaattgcgcgctccggaaatcatcacgcgcaacgaaaagcgcatgctgcaa
gaagcggttgactcgctgctggacaacggccgtcgcggtaaggcgatgaccggcgccaac
aagcgtccgctgaagtcgctggctgaaatgatcaagggtaagggcggccgtttccgtcaa
aacttgctcggtaagcgcgtcgactactccggccgttccgtcatcgtggtgggcccgcag
ctcaaactgcatcagtgcggtctgccgaagctgatggcgttggaattgttcaagcccttc
attttcaacaagctggaactgatggggctggcaacgaccatcaaggcagccaagaagctg
gtcgaaattcaagagcctgtggtctgggacatcctggaagacgtgatccgcgaacatccg
gtcatgctgaaccgcgcgccgacactgcaccgtctgggtatccaggcgtttgagccggtc
ctgatcgaaggtaaggcgatccagctgcatccgctggtttgcgccgcgttcaacgccgac
tttgacggcgaccagatggcggttcacgttccactgtcgatcgaagcacagatggaagcg
cgtacgctgatgctggcgtcgaacaacatcctgttcccatcgaacggcgaaccgtcgatc
gtgccatcccaagatatcgtgctgggtctgtactacgcgacacgtgaagcgatcaacgcc
aagaacgaaggcatgttgttccaggacgtctcggaagtcatccgtgcgtacgacaacaag
gaagtcgaactggctacccgcgtcaccgtgcgtatcgttgaaaatccaaaggatccggtc
accggtgaattcgttcgtaccgtcaagcgttacgaaacgaccgtcggccgcgccatcctg
tcggaaattctgccgaagggcctgccattctccgtgctgaaccgtgcgttgaagaagaag
gaaatttcgaagctgatcaacacgtcgttccgcaagtgcggtctgcgcgcaaccgttgtg
ttcgccgaccaactgatgcaatcgggcttccgcctggcgacacgcgccggtatctcgatc
tgcgtggacgacatgctggtgccgccacaaaaggcgaccatcattgcgaccgctgaaagc
gaagtcaaacagatcgaacagcaatactcgtccggtctggtgactgcaggcgaacgctac
aacaaggttgtggacatctggggcaaggccggcgacgacgtcggcaaggcgatgatggac
cagctgaaggtcgaagacgtggttcgccgcgacggcaccaagggtacacaagagtcgttc
aacgcgatttacatgatggccgactccggcgcccgcggttccgcagcgcagattcgtcag
ctggcaggtatgcgtggtctgatggcgaaaccggacggttcgattatcgaaacgccgatt
accgcgaacttccgcgaaggcctgaacgtgttgcagtactttatttcgacgcacggcgcc
cgtaagggtctggccgatacggcgctgaagactgcgaactccggttacctgacacgccgt
ctggtcgatgtgacccaggatctggtcgtgatcgaagatgattgcggtacctccaacggc
gcgtccatgaaggcgatggttgaaggcggtgaagtcattgaagcgctgcgcgaccgtatc
ctcggccgtgttgctgctaccgacatcatcaatcctgaaacccaggctacgctgtacgaa
gccggtacgctgatggatgaagatacggttgaagaagtcgaacgtctgggcatcgatgaa
gtcaaggttcgcactccgctgacttgcgacacgcgctacggcctgtgcgccaagtgctac
ggtcgcgatctgggccgcggcgtgctggtcaacagcggcgaagcagtcggcgttatcgct
gcgcagtcgatcggtgagccaggtactcagctgaccatgcgtacgttccacatcggtggt
gcggcatcgcgtgcagcagttgcttcgtcggtggaagccaagtccaacggtacgatccgc
ttcacagcgacaatgcgttacgtcaccaacggcaagggcgagctgatcgtcatttcccgt
tcgggcgaagtgctgattaccgacgacctcggccgtgagcgtgagcgtcataaagtaccg
tacggtgcgaccctgatcgtcaaggacggcatggtcatcaaggccggtacggcactggca
acatgggatccgctgacacgtccgatcatcaccgagtacaccggtaccgtgaagttcgaa
aacgtcgaagaaggttcgaccgttgccaaacagatcgacgaagtgaccggtctgtcgaca
ctggtggttatcgatgccaagcgccgcggttcgtccgctgccaaggtgttgcgtccgcag
gtcaagctgctcaacgagcaaggcgaagaagtcaagatcgccggtaccgaacacgcagtg
acgatcggcttccaggttggcgcgctgattaccgtcaaggacggtcagcaagtccacgtg
ggtgaagtgctggcgcgtatcccgactgaatcgcaaaagacgcgcgatattaccggtggt
ctgccacgcgttgccgaactgttcgaagcacgttcgccgaaggatgcaggtatgctggct
gaagtcacaggtactgtggcgttcggtaaggaaaccaagggcaagcaacgtctggaaatc
acagacatggacggtgccaagcatgagttcctgatcaccaaggacaagcaagtactggtg
catgacggccaggtggtgaacaagggcgaaatgattgtcgacggtcccgccgatccgcaa
gacatcctgcgcctgttgggtatcgaagcgctggcgcgttacatcgtcgacgaagtgcag
gacgtgtatcgcttgcaaggcgtgaagatcaacgacaagcacatcgaagtcatcgtgcgt
cagatgctgcgtcgcgtgcaagtggtggatccgggtgataccaactacatcaccggtgaa
caggtcgaacgttcggaactgctggacgaaaacgatcgtgtcaatgcagagaacaagatt
cctgcaacgtacgaaaacgttttgctgggtattaccaaggcatcgctgtcgaccgactcg
ttcatctcggctgcatcgttccaggagaccacacgtgtcctgaccgaagcggcgatcatg
ggcaagaaggacggcctgcgcggtctgaaggaaaacgtcatcgttggtcgtctgatcccg
gctggtactggtctggcgttccaccgtgcacgcaaggaaaaagacgcatgggaagccgac
gagcgcgcagcgctgttggaatccgagcgtcaggcgcgtgtgaccgaaaccgaagcgcac
tccaccgagactttcggcggtgcagacggcgaagcgtaa
DBGET
integrated database retrieval system
