Herbaspirillum sp. meg3: hmeg3_24190
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Entry
hmeg3_24190 CDS
T05024
Name
(GenBank) DNA/RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hee
Herbaspirillum sp. meg3
Pathway
hee03420
Nucleotide excision repair
hee03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
hmeg3_24190
03430 Mismatch repair
hmeg3_24190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hee03400
]
hmeg3_24190
Enzymes [BR:
hee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
hmeg3_24190
DNA repair and recombination proteins [BR:
hee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
hmeg3_24190
MMR (mismatch excision repair)
Other MMR factors
hmeg3_24190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Viral_helicase1
UvrD_C_2
AAA_22
AAA_30
nSTAND3
AAA_12
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
ASU41095
UniProt:
A0A223PG80
LinkDB
All DBs
Position
complement(5377788..5379791)
Genome browser
AA seq
667 aa
AA seq
DB search
MAVPQTDEQIEILKCHAQIVMIEAVAGSGKTTTLAMLVKQALTRGLGAHQIQCLCFSEGA
NKRFREKLYEEGVTRPVPLNTVEAYARECLAQLGEALALERTRYYSSDEELRPHLVAAAN
SVLARYEGRAGRADNGFDFSFEKNSANAEEMFSLLYRLKASLASHRFHDEELDYDDLDQL
ATQFGTQIEAVEIGIAYERQRQTYPGEYKWRSAADLVPDLVELLSSHPSALEILPVKSLF
LIDEWHDINAAEFRLLQLLLRGNKLVAVGDRYQIINSARGADIVYSTAGFEMAFPNAQYL
PLGKSYRFGTSLSKLAQRLTTRKCASHEDLYTEIKRLTYDPTQSGDCAAKVTQQVQALVK
ARADTRYSDIAIIVREPDQTIEIENLLLDQNIPYYCDDIESYLHRPEILMLRGLLHMASN
SFATLQGDKESIKRMVMGFSLYLPVGESSENWERGYFAEGTWFEEAQRMIAEQPNALKDF
FEAVLCKPRDTDDDMVLRWKQRFTDVVEELQKLNKENSAAELLNFANRHLSLVDATSRAF
INRSRATSAAKSIQTFIAFASRHPEMNAADFLAELHRRQQKVSKNRSAIQSRRQLTLTTI
QAAKGRQWPHVLVPYLQQHEFPRLRDIAEEVRHFYVAMTRAISSLSLFEPDDEHAEQRSV
LMNRVRK
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgccccagaccgacgagcagatagagattttgaagtgccacgcccagatcgtc
atgatcgaggcggttgccggctcgggtaaaaccacgacgctggcgatgctggtgaagcag
gcgctgacaagagggctcggtgcgcatcagattcaatgcctgtgtttttcggaaggggca
aacaagcgcttccgcgaaaaactgtacgaagagggcgtcaccagaccggtgccgctgaat
accgtggaagcctacgcgcgcgagtgcctcgcccagctgggtgaggcattggccctggag
cggacgcgctattattcctcggatgaagaactgcgcccgcatctggtagcggcagccaac
agtgtattggcacgctatgaaggcagagcggggcgggccgacaacggtttcgatttttcc
ttcgaaaaaaacagtgccaatgccgaggaaatgttctcgctgctataccgcctcaaggcg
agtctggcctcgcatcgcttccatgatgaagagcttgattacgacgatctggatcagctg
gcgacacagttcggcacccagatcgaagcagtcgaaatcggcatcgcttatgaacggcaa
cggcaaacctatcccggtgaatacaaatggcgcagcgccgccgatctggtgccggatctg
gttgagttgctgagcagccatccgtccgcgctggagatccttccggtcaaaagcttgttt
ctgatcgatgaatggcacgatatcaatgcggctgaattccggctgcttcaattgttgcta
aggggaaataaattggtggcggtcggcgatcgttatcaaattatcaactctgcgcgtggc
gcggatatcgtttattcgactgccggttttgagatggccttcccgaatgcacagtatctg
ccgctggggaagtcctatcgtttcgggacctcgctgtccaagctggcgcagcggctgacc
acacgcaagtgtgcctcgcatgaagatctgtataccgaaatcaagcgactgacctacgac
ccgacgcaatccggcgattgcgccgcgaaggtgacgcagcaggtgcaagccctggtgaag
gcgagggcggacacgcgctactccgatattgcgatcatcgtgcgtgagccggatcagact
atcgagatcgaaaacctgctgctcgatcagaacattccgtactactgcgacgacatcgag
tcttacctccaccgtcccgaaattctgatgctgcgcggcttactgcacatggcgagcaat
tcgttcgcgacactgcaaggcgacaaggaaagcatcaagcgcatggtcatgggattctcc
ctgtatctgccggtgggggagtcgtccgaaaactgggaacgcggttacttcgccgaaggc
acctggttcgaagaagcgcaacggatgattgccgagcagccgaacgcgctcaaggatttt
tttgaagccgtactctgtaagccgcgcgatacggacgacgacatggtgctgcgctggaag
cagcgcttcacggatgtcgtggaagaattacagaagctgaacaaggagaactcggccgcg
gagttgctcaacttcgccaatcgccatctgtcattggtcgacgccaccagccgggccttc
atcaatcgcagccgggcaacgtcggcggccaagtcgatccagaccttcatcgcttttgca
tcacgccacccggagatgaatgcggctgacttcctcgctgagctgcatcgccgccagcaa
aaggtcagcaagaatcgaagcgcaattcagtcacgccggcaattgacgctgacgaccatc
caggcggcgaaagggcggcagtggccacatgtgttggtgccatatctgcagcagcatgaa
tttccacggctgcgcgatatcgctgaagaggtgcgccatttttatgtcgccatgacccgc
gccatctccagtctgtccttgtttgaacccgacgatgaacacgcggagcaacgcagtgtt
ttgatgaatcgcgtgcgcaagtaa
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