Helicobacter pylori F16: HPF16_0003
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Entry
HPF16_0003 CDS
T01910
Symbol
kdsA
Name
(GenBank) 2-dehydro-3-deoxyphosphooctonate aldolase
KO
K01627
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:
2.5.1.55
]
Organism
hef
Helicobacter pylori F16
Pathway
hef00541
Biosynthesis of various nucleotide sugars
hef01100
Metabolic pathways
hef01250
Biosynthesis of nucleotide sugars
Module
hef_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
hef00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
HPF16_0003 (kdsA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
hef01005
]
HPF16_0003 (kdsA)
Enzymes [BR:
hef01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.55 3-deoxy-8-phosphooctulonate synthase
HPF16_0003 (kdsA)
Lipopolysaccharide biosynthesis proteins [BR:
hef01005
]
Lipid A
HPF16_0003 (kdsA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAHP_synth_1
DUF3657
Motif
Other DBs
NCBI-ProteinID:
BAJ54600
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All DBs
Position
complement(909..1739)
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AA seq
276 aa
AA seq
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MKTSKTKTPRSVLIAGPCVIESLENLRSIATKLQPLANNERLDFYFKASFDKANRTSLES
YRGPGLEKGLEMLQTIKDEFGYKILTDVHESYQASAAAKVADILQIPAFLCRQTDLIVGV
SQTNAIINIKKGQFMNPKDMQYSVLKALKTRDKSIQSPTYETALKNGVWLCERGSSFGYG
NLVVDMRSLKIMREFAPVIFDATHSVQMPGGANGKSSGDSSFAPILARAAAAVGIDGLFA
ETHVDPKNALSDGANMLKPGELEHLVADMLKIQNLF
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacttctaaaacaaaaacccctagatccgttttaatcgctggcccatgcgtcatt
gagagcttggaaaatctaagaagtatcgctaccaaattacaacccctagccaacaacgag
cggttggatttttattttaaagcgagttttgataaggcgaaccgcacgagtttagagagt
tacagagggcctggtttagaaaaaggcttagaaatgttacaaaccatcaaagatgaattt
ggctataaaattttaaccgatgtgcatgaaagctatcaagcaagtgcagcggccaaagta
gcggatattttacaaatcccggcgtttttgtgccgccaaacggatctgattgtaggagtg
agtcaaactaacgccattatcaatatcaaaaaagggcaattcatgaacccaaaagacatg
cagtattccgttctaaaagcccttaaaacgagagataaaagcattcaaagccccacttat
gaaacagcgttaaaaaatggcgtgtggctgtgtgaaagagggagcagctttgggtatggg
aatttagtggtggatatgcgctctttaaaaatcatgcgagagtttgcccctgtgattttt
gacgctactcatagcgtgcaaatgccagggggagcgaacgggaaaagttcaggagacagc
tcttttgcccctattttagccagagcggcggcggcggtggggattgatgggttgttcgct
gaaacgcatgttgatcctaaaaacgctttaagcgatggggcgaacatgctaaaacctggc
gagctagaacatttagtagccgacatgttaaaaatccaaaatttattttaa
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