Helicobacter pylori F16: HPF16_0129
Help
Entry
HPF16_0129 CDS
T01910
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hef
Helicobacter pylori F16
Brite
KEGG Orthology (KO) [BR:
hef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hef03032
]
HPF16_0129 (topA)
03400 DNA repair and recombination proteins [BR:
hef03400
]
HPF16_0129 (topA)
Enzymes [BR:
hef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HPF16_0129 (topA)
DNA replication proteins [BR:
hef03032
]
Prokaryotic type
DNA Topoisomerases
HPF16_0129 (topA)
DNA repair and recombination proteins [BR:
hef03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HPF16_0129 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF1272
Zn_ribbon_LysW
Lar_restr_allev
DUF7575
Motif
Other DBs
NCBI-ProteinID:
BAJ54726
LinkDB
All DBs
Position
134242..136452
Genome browser
AA seq
736 aa
AA seq
DB search
MKHLIIVESPAKAKTIKNFLDKNYEVIASKGHVRDLSKFALGIKIDETGFTPNYVVDKDH
KELVKQIIELSKKASTTYIATDEDREGEAIGYHVACLIGGKLESYPRIVFHEITQNAILN
ALKTPRQIDMSKVNAQQARRFLDRIVGFKLSSLISSKITKGLSAGRVQSAALKLVIDKER
EIKAFKPLTYFTLDAYFESHLEAQLISYKGNKLKAQELIDKKKAQEIKNELEKESYTISS
IIKKSKKSPTPPPFMTSTLQQSASSLLGFSPTKTMSIAQKLYEGVTTPQGVMGVITYMRT
DSLNIAKEALEEARNKILKDYGKDYLPPKAKVYSSKNKNAQEAHEAIRPTSIILEPNALK
DYLKPEELKLYTLIYKRFLASQMQDALFESQSVVVACEKGEFKASGRKLLFDGYYKILGN
DDKDKLLPNLKENDPIKLEKLESNAHVTEPPARYSEASLIKVLESLGIGRPSTYAPTISL
LQNRDYIKVEKKQISALESAFKVIEILEKHFEEIVDSKFSASLEEELDNIAQNKADYQQV
LKDFYYPFMDKIEAGKKNIISQKVHEKTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKY
VKQTENANDGAKQELCEKCGGEMVQKFSRNGAFLACNNYPECKNTKSLKNTPNANETIEG
VKCPECGGDIALKKSRKGSFYGCNNYPKCNFLSNHKPINKRCEKCHYLMSERIYRKKKAH
ECIQCKERVFLEEDDG
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaccttattatcgtagaatcccccgcaaaagccaaaaccattaaaaattttttg
gataaaaattacgaagtcatcgcctctaaagggcatgttagggatttatccaaattcgct
ttaggcattaagattgatgaaacaggcttcactcctaattatgtcgtggataaagaccat
aaagagcttgtcaaacagatcatagagctttctaaaaaggcatctaccacctacatcgct
accgatgaagacagagaaggggaagcgataggctatcatgtggcgtgcttgattgggggg
aaattagagagctatcctaggattgtttttcatgagatcacgcaaaatgcgattttaaac
gctctaaaaaccccacgacaaattgacatgtcaaaagtcaatgcccaacaagccagacgc
tttttggatcggatcgtggggtttaagctcagctcgttgatttcatcaaaaatcactaaa
ggtttgagcgctgggcgggtgcaaagcgcagctttaaagcttgtgattgataaagagagg
gagatcaaagcctttaagcctttaacctacttcacgctagacgcttattttgagtcgcat
ttagaagcgcaactcattagctataagggcaacaaactcaaagcccaagagcttattgac
aaaaaaaaagctcaagagattaaaaacgaattagaaaaagaaagctatactatttctagt
attattaaaaaatctaaaaaatcccccacaccgccccctttcatgacttctactttacag
caaagcgcttccagtcttttaggcttttcgcccacaaaaaccatgagtatcgctcaaaaa
ttgtatgaaggtgtaaccacaccgcaaggggttatgggggtgatcacttacatgagaacc
gatagcttgaatatcgctaaagaagctttagaagaagcgaggaataagattttaaaagac
tatggcaaagactacttaccccctaaagccaaagtctattccagcaagaataaaaacgcc
caagaagcccatgaagcgatcaggcccacttctattattttagagccaaacgctttaaaa
gactaccttaagcctgaagaattaaagctctataccttaatttataaacgcttcttagct
tctcaaatgcaagacgctctttttgaaagccaaagcgtggttgtggcttgcgaaaaaggc
gagtttaaagccagtggcagaaaactcctttttgatggctattataaaattttaggcaat
gacgataaggacaaattgctccccaatttgaaagaaaacgaccccattaaattagaaaaa
ctagagagcaacgcccatgttacagaacctccagcacgctattcagaagcgagcttgatt
aaagttttagaaagtttaggcataggcagacctagcacctacgccccaacgatttccctc
ttacaaaacagagactacatcaaggtagaaaaaaagcaaatcagcgctttagagagcgct
tttaaggtgatagaaattttagaaaagcattttgaagaaatcgtggattccaaattcagc
gcttctttagaagaggaactagacaatatcgctcaaaataaagccgactatcagcaagtc
ttaaaggatttttactacccctttatggataaaattgaagctgggaaaaagaatatcatc
tctcaaaaagtgcatgaaaaaaccggccaatcatgccctaaatgcggtggggaattagtc
aaaaaaaatagccgttatggggagtttatcgcttgcaacaattaccctaaatgcaaatat
gtcaaacaaactgaaaacgccaatgatggagccaagcaagaattgtgcgaaaaatgcgga
ggggaaatggtgcaaaaattcagcagaaacggagcgtttttagcttgcaacaactaccct
gaatgcaaaaacaccaaatcgttaaaaaacacccctaacgcaaacgaaacaatagaaggc
gtgaaatgcccagaatgcgggggggatattgccttaaaaaagagcagaaaaggctcgttt
tatggctgtaacaattaccctaaatgcaattttttatccaaccataagcctatcaacaag
cgttgtgaaaaatgccattatttaatgagtgaaagaatctatcgcaaaaaaaaggcgcat
gaatgcatccaatgcaaagagcgcgtgtttttagaggaagatgatggctaa
DBGET
integrated database retrieval system
