Helicobacter pylori F16: HPF16_0905
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Entry
HPF16_0905 CDS
T01910
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
hef
Helicobacter pylori F16
Brite
KEGG Orthology (KO) [BR:
hef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hef03016
]
HPF16_0905 (truD)
Enzymes [BR:
hef01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
HPF16_0905 (truD)
Transfer RNA biogenesis [BR:
hef03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
HPF16_0905 (truD)
Prokaryotic type
HPF16_0905 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
BAJ55502
LinkDB
All DBs
Position
959937..961082
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AA seq
381 aa
AA seq
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MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEML
QIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTHNLQERNLKILSLNYH
HNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIVQFGMPNYFGPQRFGKFNDNHQEG
LKILQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLN
INPNTLKALKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEAVPTGLLDGKK
ALYAKNLSLEIEKEFQHNLLSSHAKTLGSRRFFWVFVENITSQYVKEKAQFELGFYLPKG
SYASALLKEIKHEKGENNDEF
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaattttatgcccctattgcatgcttataaccatgcgagcattgattttcat
ttcaattctagcgctagggatttttgcgtgcatgaagtgcctttgtatgaattcagtaac
acaggcgaacatgccgttatccaagtgagaaaaagcggtttaagcactttagaaatgctt
caaattttttctcaaattttaggggtaagaatcgctgaattgggttatgccggcttgaaa
gataaaaacgcactgacgactcaattcatctcgctccctaaaaaatacgcccctttatta
gaaaaaaatacgcataatttgcaagaaagaaaccttaaaatcttgtctttgaattaccat
cataataaaatcaaattagggcatttgaaagggaatcgcttttttatgcgttttaaaaaa
atgacccccctaaacgctcaaaagactgaacaagttttagaacaaatcgtgcagtttggc
atgcctaattattttggcccgcaacgctttgggaagttcaatgacaaccaccaagagggt
ttaaaaatcttgcaaaatcaaacgaaattcgcccaccaaaaattaaacgcttttttaatt
tcaagctatcaaagttatttgtttaacgcacttttaagcaaacgattagaaatcagtaaa
atcattagcgcttttagtgtcaaagaaaatttagaatttttcaaacaaaaaaatttaaat
atcaatccaaacaccctaaaagcccttaaaaaccaagcccacccctttaaaatcttagaa
ggcgatgtgatgtgccattacccttacgggaagttttttgacgctttagaattagaaaaa
gagagcgaaaggtttttgaaaaaagaagctgtgcctacggggttattagacggcaaaaaa
gctctttatgcaaaaaatttgagtttagaaattgaaaaagaattccagcataatctttta
agtagccatgctaaaacgctaggatccaggcggtttttttgggtgtttgtagaaaatata
acttctcaatatgtgaaagaaaaagcgcaatttgaattgggattttacttgcctaaaggg
agttatgcgagcgcgttgctcaaagaaatcaagcatgagaaaggagaaaataatgacgaa
ttttga
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