Helicobacter pylori F16: HPF16_1134
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Entry
HPF16_1134 CDS
T01910
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta/beta'
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hef
Helicobacter pylori F16
Pathway
hef03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hef00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPF16_1134 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hef03021
]
HPF16_1134 (rpoB)
03400 DNA repair and recombination proteins [BR:
hef03400
]
HPF16_1134 (rpoB)
Enzymes [BR:
hef01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPF16_1134 (rpoB)
Transcription machinery [BR:
hef03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPF16_1134 (rpoB)
DNA repair and recombination proteins [BR:
hef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPF16_1134 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
BAJ55731
LinkDB
All DBs
Position
complement(1202431..1211103)
Genome browser
AA seq
2890 aa
AA seq
DB search
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQ
DEHNRITLEYVGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMESDLKDPQGKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLA
EPVMVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFSADSESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEK
IIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQIPI
VKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDIFTS
THIYEKEVDARELKHGVEEFTADIPDVKEEVLAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYE
EEKAKLDIEHFDRLTMLNREELLRVSSLLSQEILEEPFSHNGKDYKEGDQIPKEEIASIN
RFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIASMLEDKTKDFVKELRAKMLEIANAINEKDPLTIHVLESCSDEE
LLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDG
APKPIVIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTNLVMKYDILNEEQHQNISRRY
EDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKCPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDYVHKVGGIGITATFLDNLKTFGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMSAIAQDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEIMDIAVGSELIEPLEERIFGRVLLEDAIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRAPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNGDQEAKFVLRRSDIVKPSELAG
VGGKIEGKVYLPYTSGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAK
EKGAIKYYVLEANHLERTHGIKKGDIVSEKGLFAVIADDNGREAARHYIARGSEILIDDN
SEVSANSVISKPTTNTFKTIATWDSYNTPIIADFKGKVGFVDIIAGVTVAEKEDENTGIT
SLVVNDYIPSGYKPSLFLEGVNGEEVRYFLEPKTSIAIIDGSSVEQAEVLAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRSMDYFV
DKGKQILVHADEFVHAGEAMTDGVVSSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIV
LRTLEDDPKF
NT seq
8673 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccaaca
gatttagaagtccctaatttattattattacaacgagacagctatgattctttcttgtat
tctaaagatggtaaggagagcgggattgaaaaggtttttaaatccattttccctatccaa
gatgagcataaccgcatcactttagaatatgtaggctgtgaatttggcaagtctaaatac
actgttagagaagcgatggagaggggcattacctactctatcccccttaaaattaaagtg
cgcttgatcttgtgggaaaaagacaccaaaagtggcgaaaagaacggcattaaggatatt
aaagaacaaagcattttcattcgtgagatccctttgatgacggaacgcacttcatttatt
atcaatggggtggagcgcgtggtcgtcaatcaactccacagaagccccggtgtgattttc
aaagaagaagagtccagcacttctttaaacaagctcatttacacagggcaaatcatccct
gataggggttcgtggttgtattttgaatacgattctaaagatgttttatacgctcgtatc
aacaaacgccgtaaagtgcctgtgactattttattcagggcgatggattatcaaaaacaa
gacattatcaaaatgttctacccgcttgttaaagtgcgttatgaaaatgataagtatttg
attccgtttgcttcattagacgccaatcaaagaatggaatctgacttgaaagatcctcaa
ggcaaggttattcttttagcgggtaaaaaactcacttcaagaaagattaaagagcttaaa
gaaaaccatttagaatgggtggaataccctatggatattttactcaatcgtcatttagct
gagccggttatggtagggaaagaagtcttattggacatgctcactcagctagataaaaac
aaattagaaaaaatccacgatttaggcgtacaagaatttgtgatcatcaacgatctagcg
ttagggcatgacgcttccattatccattctttctcagccgattctgagtctttgaaatta
ctcaagcaaactgaaaaaattgatgatgaaaacgctctagcggcgattcgcatccataaa
gttatgaagccaggcgatcctgttacaactgaagtggctaagcagtttgtcaaaaaactt
ttctttgatcctgaacgctatgatttgaccatggtgggccgtatgaaaatgaatcacaag
ttgggcttgcatgtgcctgattacattacaactttaacgcatgaagatattatcaccacc
gttaaatacctcatgaagattaaaaacaatcagggcaagattgatgacagagatcacttg
ggcaatcgtaggatcagggcggtaggggaattattagccaatgaattgcattcaggctta
gtgaaaatgcaaaagaccattaaagacaagctcactaccatgagcggggcttttgattcg
ctcatgcctcatgacttggtcaattctaaaatgatcacaagcaccatcatggaatttttc
atgggtggtcagctctcgcaattcatggatcaaactaaccccttgagtgaggttacgcac
aaacgccgcctttcagcactcggtgaagggggattggtgaaagacagggtagggtttgaa
gctagggatgtgcaccccacgcactatggccgaatttgccccattgaaaccccagaaggt
caaaatatcggtctgatcaacaccctttccactttcacaagagtgaatgatttaggcttt
attgaagccccttataaaaaggttgtggatggtaaggtagtgggtgagacgatttatttg
accgctattcaagaagacagccacattatcgctcccgcaagcacccccattgatgaagag
ggtaatattttaggcgatttgattgaaacgcgcgtggaaggcgagattgttttaaacgaa
aaaagcaaagtaaccttaatggatttaagctctagcatgctagtaggggtcgccgcatcg
ctcattcctttcttagagcatgatgacgccaatcgcgccttaatggggactaacatgcag
cgtcaagcggtgccgttattaagaagcgacgctcccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggagcgatcaaagccaatcgtgcaggagtcgtagaaaaa
attgattctaaaaatatttatattttaggcgaaggcaaagaagaagcctatattgatgcg
tattctttgcaaaaaaacttacgcaccaaccaaaacaccagtttcaaccaaatccctatc
gttaaagtgggcgataaagtggaagctgggcaaatcatcgctgatggccctagcatggat
agaggcgagttggcgttagggaaaaatgtgcgcgtggcgttcatgccttggaatggctat
aactttgaagacgctatcgtggtgagtgagcgcatcactaaagatgatattttcacttcc
acccacatttatgaaaaagaagtggatgctagggagcttaagcatggcgtggaagaattt
accgctgatattcctgatgtgaaagaagaagtgctcgctcatcttgatgaaagcgggatc
gttaaagtgggcacttatgtgagcgctggcatgattttagtgggtaagacttctcctaaa
ggcgagattaaaagcacgcctgaagagcggcttttaagggctatttttggggataaagcc
gggcatgtggtcaataagagtttgtattgccctccaagtttagaaggcacggtgattgat
gtgaaagtcttcactaaaaaaggttatgagaaagatgcacgggttttgagcgcgtatgaa
gaagaaaaagccaagcttgatatagagcattttgaccgcttgaccatgctcaatagagaa
gaattgttgcgcgtcagctcgctcctttctcaagagattttagaagagcctttcagccat
aatggcaaggattataaagaaggcgatcaaatccctaaagaagaaatcgcttcaatcaac
cgcttcactttggctagtttggtgaaaaagtattctaaagaagtgcaaaaccactatgaa
atcactaaaaacaatttcttagagcaaaagaaagtcttgggcgaagagcatgaagaaaag
ctttctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggtgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatatcgtgccggttgcggatatgccttataccgctgatggcgag
cctgtagatattgtcttaaaccctttaggcgtgccaagccgcatgaatatcgggcagatt
ttagaaatgcatttaggcttagtggggaaagaatttgggaaacaaatcgctagcatgcta
gaggataaaaccaaagattttgtcaaagaattgcgcgctaaaatgctagaaatcgctaac
gccattaatgaaaaagaccccttgacaatccatgtgcttgagagttgttctgatgaagag
cttttggaatacgcaaaagattggagcaagggcgttaagatggctatccctgtgtttgaa
ggcatctcgcaagaaaaattttataagctatttgaattagctaagatcgctatggatggc
aaaatggatctgtatgatgggcgcacaggcgagaaaatgagggagcgcgtgaatgtgggc
tatatgtatatgatcaaactccaccatttagtggatgaaaaagtccatgccagaagcaca
ggcccttatagcttggtaacgcaccagcctgttgggggtaaagcgctctttgggggtcaa
aggtttggggaaatggaagtgtgggcgctagaagcttatggcgcagcgcacactctaaaa
gaaatgctcaccattaaatccgatgatattagaggcagagagaacgcttatagggctatc
gctaaaggtgagcaagtgggtgagagtgaaatccctgagactttctatgttttgactaaa
gaattgcaatcgctcgctttggatattaatatttttggggacgatgtggatgaagatgga
gcacctaaacccattgtcattaaagaagatgacagacctaaagactttagttctttccaa
ctcacgctagccagccctgaaaaaatccattcttggagttatggggaagtcaaaaagcca
gaaacgatcaattatcgcaccctaaaacctgaacgagacggcttgttttgcatgaaaatc
tttggccccactaaagattatgaatgcttgtgcggtaaatacaaaaagcctcgcttcaaa
gacattggcacatgcgaaaaatgcggcgtggcgatcacgcactccaaagtcaggcgtttt
agaatggggcatattgaattagccactcctgtagcgcatatctggtatgtcaattccttg
cctagccgtatcggcacgcttttaggcgttaagatgaaagatttagagcgcgtgttgtat
tatgaagcttatatcgttaaagagccaggcgaagccgcttatgacaatgaaggcactaat
cttgtgatgaaatacgatattttgaatgaagagcagcatcaaaatatctcacgaagatac
gaagacaggggctttgtagcgcaaatgggcggtgaagcgatcaaggatttgctagaagaa
attgatttgatcaccttattgcagagtttgaaagaagaagtgaaagacaccaattccgat
gcaaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttaaattctggt
aacaggcctgaatggatgatgctcacggttttaccggtattgccaccggatttaaggcct
ttagtcgcgctagatggcgggaagtttgcggtcagcgatgtgaatgagttgtatcgccgt
gtcatcaatcgtaaccaacgcttgaaacgcctaatggagcttggggcgccagaaattatt
gtgcgcaatgaaaaaaggatgttgcaagaagccgtggatgtgctttttgataacggccgt
agcactaatgcggttaaaggggctaacaaatgccctttaaaatcgctcagtgaaatcatt
aagggcaagcaagggcgtttcaggcaaaaccttttaggtaagcgcgtggatttttcaggc
agaagcgtgattgtggttgggccaaacctcaagatggacgagtgcggattgcctaaaaac
atggcgttagaactcttcaaaccgcatttgttatccaagcttgaagagagaggctatgcc
accacgctcaaacaggctaaacgcatgattgaacaaaaaagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaggggtatccggtgctactcaaccgcgctcctactttgcacaag
caatccattcaagcgttccatccaaagcttattgacggcaaagcgatccaattgcacccg
ttagtgtgttcagcgttcaacgccgattttgacggggatcaaatggcggtgcatgtgcct
ttaagccaggaagcgatcgctgaatgcaaggtgctgatgctaagctctatgaatatcctt
ttacccgctagcggtaaagccgtagccattcctagccaggatatggttttagggctttat
tatctttctttagaaaagagcggggtcaagggcgagcataaacttttttctagcgtgaat
gaaatcatcaccgctattgacacgaaagaattagacatccacgcaaagattagggtttta
gatcaagggaatattatcgctacgagcgcgggacgcatgatcattaagtccattttgcct
gattttatccctactgatttgtggaacagacccatgaagaaaaaagatattggcgtgctt
gtggattatgtgcataaagtcggtggtattggcattactgcaacctttttggataattta
aaaacgtttggctttaggtatgcgactaaggctggtatttctatctctatggaggatatt
atcacgccaaaagacaagcaaaaaatggtggaaaaagccaaagtagaggttaaaaaaatc
cagcaacaatacgatcaagggctgctcactgaccaagagcgttacaataagatcattgac
acttggactgaagtcaatgacaaaatgagtaaagaaatgatgagtgctatcgcgcaagat
aaagagggctttaactctatttatatgatggcagatagcggtgcaaggggtagtgcggca
caaatccgtcagctttcagcgatgaggggccttatgacaaagccagatggcagtatcatt
gaaacgcccattatttctaactttaaagaggggttgaatgtcttagaatactttaactcc
acgcatggcgctagaaagggattagcggatacagcgttaaaaacagccaatgcagggtat
ttgacaagaaaactcattgatgtttcgcaaaatgtcaaggtggtgtctgatgattgcggc
acgcatgaagggattgaaatcatggatattgcggtggggagtgagctgattgaaccttta
gaagagcgtatttttgggcgcgttttattagaagatgcgatcgatcccattacaaatgaa
atcttgctttatgcggacactttgattgatgaagagggcgctaaaaaggtggttgaagct
gggattaaatccattacgatccgcgccccagtaacttgtaaagcgccaaagggcgtgtgc
gcgaaatgctatggtttgaatttgggcgaaggcaagatgagttatccgggtgaagcggtg
ggcgtggtagctgcgcaatctatcggggagcctggaactcagctcactttaaggactttc
catgtgggcgggacagcgagtaggagtcaggatgagcgcgaaattgtagcgagcaaagaa
ggttttgtgcgtttctacaaccttaggacctacacgaataaagagggtaaaaacattatc
gctaaccgccgtaacgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattacgcattgaaacggtctatgaagaagtcgttgtgagcgtgaaaaatggcgat
caagaagctaaatttgttttaagaagaagcgatattgtcaagccaagcgaattggccggc
gttggcggtaagattgaggggaaagtgtatttgccttatactagtgggcataaggtgcat
aaggggggaagtatcgctgatattatccaagagggttggaatgtgcccaatcgcatccct
tatgcgagcgaattgctagtcaaggataatgaccctattgcgcaagatgtgtatgccaaa
gaaaaaggtgcaatcaaatactatgttttagaggccaatcatttagagcgcacccatggg
atcaaaaagggcgatattgtgagcgaaaaaggcttgtttgcggtgatagctgatgataat
ggtagggaagccgctcgccattatatcgctaggggttctgagatcttgattgatgataat
agtgaagtgagtgctaatagcgtgatttctaaacctacgactaacactttcaaaacgatt
gccacatgggattcttacaacacccctatcattgcggactttaaaggtaaggtgggtttt
gtggatattatcgcaggggttacggtcgctgaaaaagaagacgaaaataccggtatcaca
agcttagtggtgaatgattacattccaagcggatacaaaccaagcttgtttttagagggg
gttaatggcgaagaggtgcgttatttcctagagccaaaaacttctatcgctattattgat
ggctctagcgtggagcaggctgaagtgttagcgaaaatccctaaagcgaccgttaaatcc
agggatattactgggggtctcccaagggtttcggaattgtttgaggcgagaaaacccaag
cctaaagatgtggcgatcctttctgaagttgatgggattgtgagttttggcaaacccatt
cgcaataaagaacacatcatcgtaacttccaaagacggccgttccatggattattttgtg
gataaaggcaagcaaattttagtgcatgctgatgaatttgtgcatgcaggagaagcgatg
acggatggagtggtttcaagccatgatattttaaggatcagcggcgaaaaagagctttat
aaatacattgtgagcgaagtccagcaagtgtatcgcaggcagggggtaagcattgcggac
aagcacattgaaatcattgtttctcaaatgctaaggcaagtgcgtattctagacagcggg
gatagcaagtttattgaaggggatttagtcagtaaaaaactcttcaaagaagaaaacgct
cgtgtgatcgctttaaaaggcgagcctgcgattgctgaaccggtgcttttagggatcact
agagcggctattgggagcgatagcatcatctcagcggcctctttccaagaaacgactaaa
gttttaacggaagccagtatcgctatgaaaaaagactttttagaagacttgaaagagaat
gtggtgttggggaggatgatccctgtgggaacgggcatgtataagaataaaaaaatcgtg
ttaagaacgcttgaagatgaccctaaattttga
DBGET
integrated database retrieval system
