Helicobacter pylori F16: HPF16_1224
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Entry
HPF16_1224 CDS
T01910
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
hef
Helicobacter pylori F16
Pathway
hef03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hef00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPF16_1224 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hef03021
]
HPF16_1224 (rpoA)
03400 DNA repair and recombination proteins [BR:
hef03400
]
HPF16_1224 (rpoA)
Enzymes [BR:
hef01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPF16_1224 (rpoA)
Transcription machinery [BR:
hef03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPF16_1224 (rpoA)
DNA repair and recombination proteins [BR:
hef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPF16_1224 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
Enkurin
Myb_DNA-bind_4
Motif
Other DBs
NCBI-ProteinID:
BAJ55821
LinkDB
All DBs
Position
complement(1300596..1301630)
Genome browser
AA seq
344 aa
AA seq
DB search
MKVIKTAPLIPSEIKVLEKEGNRVKISLAPFEFGYAVTLAHPIRRLLLLSSVGYAPVGLK
IEGVHHEFDSLRGVTEDVSLFIMNLKNIRFIAKALVGQDSSLENQSVVVDYSFKGPMELR
ARDLNSEHIEIVNPEMPLATINEDAQLNFSLIIYKGMGYVPSENTRELMPEGYMPLDGSF
TPIKNVVYEIENVLVEGDPNYEKIIFDIETDGQIDPYKAFLSAVKVMSKQLGVFGERPIA
NTEYSGDYAQRDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMG
KKSYDEITEKLNDLGYPVGTELNPEQRENLKKRLEKLEDKGGND
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttatcaaaacagcacctttgatcccatcagaaattaaggtgttagagaaagag
ggcaatcgggttaagatttctctggctccatttgagtttggttacgctgttacgctcgct
catcctattagaagactcttgcttttaagctctgtggggtatgctcctgtaggtttaaag
attgaaggcgtccatcatgagtttgactcattaagaggggttactgaagatgtgtcgctt
ttcatcatgaatttaaagaatatccgctttatagccaaggcgttagtggggcaggatagc
tctttagaaaaccaatcggttgtggtggattattcttttaaagggcctatggagcttagg
gctagggatttgaattctgagcatatagaaatcgtcaatcctgaaatgcctctagccaca
atcaacgaagacgctcaattgaatttttcgctcattatctataaaggaatggggtatgtc
ccaagcgaaaacacaagggaattgatgcctgagggctacatgccactagacggctctttc
acgccgattaaaaatgtcgtttatgagattgaaaatgttttggttgagggcgatcccaac
tatgaaaaaatcatttttgatattgaaacagacgggcagattgacccttataaagcgttt
ttatcagcggtgaaagtgatgagcaagcaactgggcgtttttggcgaaagacccattgct
aatacggagtattcaggcgattacgcccaaagagatgacgctaaagatttgagcgctaag
attgaaagcatgaatttgagcgctaggtgttttaattgcttggataaaatcggcatcaag
tatgtgggcgaactcgtgttgatgagcgaagaagagcttaaaggcgtgaaaaacatgggt
aaaaaatcctatgatgaaatcactgaaaaattgaatgatttgggctatccggtaggcaca
gaattaaaccctgaacaaagagagaatttaaagaaaagattagaaaaattagaagataaa
ggaggtaacgactga
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