Helicobacter pylori F16: HPF16_1356
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Entry
HPF16_1356 CDS
T01910
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hef
Helicobacter pylori F16
Pathway
hef03030
DNA replication
hef03430
Mismatch repair
hef03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPF16_1356 (dnaE)
03430 Mismatch repair
HPF16_1356 (dnaE)
03440 Homologous recombination
HPF16_1356 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hef03032
]
HPF16_1356 (dnaE)
03400 DNA repair and recombination proteins [BR:
hef03400
]
HPF16_1356 (dnaE)
Enzymes [BR:
hef01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HPF16_1356 (dnaE)
DNA replication proteins [BR:
hef03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HPF16_1356 (dnaE)
DNA repair and recombination proteins [BR:
hef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HPF16_1356 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BAJ55953
LinkDB
All DBs
Position
complement(1417293..1420928)
Genome browser
AA seq
1211 aa
AA seq
DB search
MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK
EGIKPIIGMEAYIHNDDNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGFYYFPR
INKKLLREHSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEYQEIFEDD
FYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTL
NDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPPS
FKFTKAYAQNEGLSFEDDASYFAYKAREGLKERLVLVPKEKHDQYKERLEKEIGVITNMK
FPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFLNPER
VSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPYKEA
DDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWEYSLNLENLNR
NAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLKTLTVI
DDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGLNKRLRPSSFE
DIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTIVYQEQVMQIV
QTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANLWDLIVKFAGY
GFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEVRALEIEVMPP
HINSSMQDFSVAEFKNQKGEPEKKIVFGLGAIKGVGGEPIKNIIEERTKGDYKSLEDFIS
RVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANEMMQGGNSLFG
AMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIKGFKNLVKSID
IEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLFEKQLSALEELDI
NKPLVFKCKIEEQEEVARLRLFEILDLESAREVKIPKARYKDPEKQKEEVREIPPIEILA
SSSCSLAIVLENDVKKEFLRQIKESALKHQGKRPLYLIIKDKDKQFKIQSDLMVNEKIKD
DFKGLEWRDLA
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagaataaagccttcacgcatctgcacttgcacacggaatattcgcttttagac
ggggcgaacaagattaaaattctagccaaacgcattaaagaattgggcatgaaaagcgtg
agcgtaactgaccatgggaacatgtttggagcgattgatttttatacgagcatgaaaaaa
gaaggcattaagcctatcatcggcatggaagcgtatatccataatgacgacaacctttct
agcaaagaaaccaaacaacgcttccatttgtgcttattcgctaaaaaccaagagggctat
gaaaatttgatgttcttaagctctatggcgtatttagaagggttttattatttcccgcgc
atcaataaaaagcttttaagggagcattctaaaggcattatcgcttctagcgcgtgcttg
caaggggaagtcaattaccatttgaatactcataatgagagaaaccgcaagtatggggct
aaaggctatgatgaagccaaaaaaatcgcttgcgaataccaagagatttttgaagacgac
ttttatttagaaatcatgcgccatggcattttagatcagcgattcattgatgagcaagtc
attaaaatgtctttagaaacggggttaaaaatcattgccaccaacgacacccactacacc
atgcctaatgacgccaaagctcaagaagtggcgatgtgcgtagcgatgggtaaaacccta
aacgataaggggcgtttgaaacactccgtgcatgagttttacatcaagtcccctgaagaa
atggcaaagctctttgcagatattccagaagctttagaaaatacccaagaaatcgctgat
aaatgcgttttagagattgatttaaaagacgataaaaagaaccccccaacccctccaagc
ttcaaattcactaaagcttacgctcaaaatgaggggctgagttttgaagatgacgcttct
tatttcgcctataaggctagagagggcttgaaagagcgcttagttttagtgcctaaagaa
aagcatgatcaatacaaagaacgattagaaaaagaaattggagtcattacgaacatgaaa
ttcccggggtatatgctgattgtgtgggattttatccgttacgctaaagaaatgggcatt
cctgtagggcctggtagggggagtgcggctgggagtttggtggcttttgccttgaaaatc
accgatattgaccccttgaaatacgatttgctctttgaaaggtttttaaaccctgaaaga
gtcagcatgcctgatattgatacggatttttgccagcgccggcgtaaggaaatcatagaa
tacatgattgaaaaatacggcaaatacaatgtggctcaagtcatcacctttaataagatg
ttggctaaaggcgtgatcagagatgtcgcaagggttttggacatgccttataaagaagcc
gatgattttgccaaactcatacctaatcgcttaggcatcacgcttaagggctatgaaaaa
aatggcgagttcatagagggggcgtgggaattagagcctaaaattaaggaattagtagag
agtaatgaattagccaaacaagtgtgggagtattcgctcaatttagagaatttgaatcgc
aacgcaggcgtgcatgccgcagccttagtggtggatagccaaaaagagttgtggcacaaa
acccctttatttgcttctgaaaaaaccggcggtatcgttacgcaatattccatgaagtat
ttagagccggtggatttgattaagtttgactttttggggcttaaaaccttgaccgtgatt
gatgatgcgcttaaaatcattaaaacgcagcacaaaattagcgtggattttttatcgttg
gatatggacgatccgaaagtgtataaaacgatccaaagcggggatacggtggggatattc
cagattgaatccgggatgtttcaagggcttaacaaacgcttaaggccttcaagctttgaa
gacattatcgctattattgcgctaggcagaccagggcctatggaatcaggcatggtagat
gattttgtgaacagaaagcatggcattgagcctatcgcttatgcgtttaaggaattagag
ccgattttaaagcccacttacggcacgatcgtctatcaagagcaagtgatgcaaatcgtg
caaactattggcggttttagtttgggtgaagcggatttgatccgccgtgctatggggaaa
aaagacgctcaaatcatggcggacaataaggctaagtttgtagaaggcgctaaaaattta
gggcatgatggccaaaaggcggctaatttgtgggatttgatcgttaaatttgccggctat
ggtttcaacaaatcgcattcggccgcttatgcgatgatcactttccaaacggcgtattta
aagacttattacaagcatgagttcatggcagcgatgctcactagcgaatccaataagatt
gaatccgtggcgcgctatattgatgaggttagggctttagaaattgaagtgatgccccca
cacatcaattcttctatgcaagatttcagcgtggcggagtttaaaaatcaaaagggtgag
ccagaaaagaaaatcgtgtttggtttaggagcgattaaaggggttgggggtgagccgatt
aaaaacatcattgaagaaaggactaaaggggattataagagtttagaagattttatttca
cgggtggatttttctaaactcactaaaaaatctttagagccattggtgaaatcagggagc
ttggataatttaggctatacccgaaaaaccatgctcgctaacttggatctaatctgtgat
gctgggcgcgctaaagacaaggctaatgaaatgatgcaagggggtaactccctttttggg
gcaatggatggcgggacaaaagagcaggttattttagacatgattgatttgggcgaacat
gacgctaaaacgcttttagaatgcgaatacgagactttaggcatccatgtttcaggcaat
cccttagacgagtttaaagaagaaattaagggctttaaaaatttagtcaaaagcattgat
attgaagagttagaaatcggctcgcaagcttatttactgggtaaaatcatggaagttaaa
aagaaaattggcaaacgaagcggtaagccttacggcacagcggacattttggacagatat
ggcaagtttgagctcatgctgtttgaaaagcaattgagcgctttagaagagttggatatt
aataagcctctagtatttaaatgcaagattgaagagcaagaagaggtcgcgcgattaagg
ctttttgagatcttggatttagagagcgctagggaggttaaaatccctaaagcccgttat
aaagaccctgaaaagcaaaaagaagaggtgcgcgaaatcccccccattgaaatactcgcc
tctagctcttgctctttagcgatcgtgttagaaaacgatgtgaaaaaagagtttttaaga
caaatcaaagagagtgctttaaaacaccagggcaaacgccccttgtatttgatcatcaaa
gataaggataagcaattcaaaatccaaagcgatttaatggtaaatgaaaagattaaggac
gattttaaagggttagagtggagggatttagcttga
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integrated database retrieval system
