Helicobacter pylori Gambia94/24: HPGAM_00625
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Entry
HPGAM_00625 CDS
T01917
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
heg
Helicobacter pylori Gambia94/24
Brite
KEGG Orthology (KO) [BR:
heg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
heg03032
]
HPGAM_00625
03400 DNA repair and recombination proteins [BR:
heg03400
]
HPGAM_00625
Enzymes [BR:
heg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HPGAM_00625
DNA replication proteins [BR:
heg03032
]
Prokaryotic type
DNA Topoisomerases
HPGAM_00625
DNA repair and recombination proteins [BR:
heg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HPGAM_00625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF1272
Zn_ribbon_LysW
Lar_restr_allev
zf_Rg
DUF7575
Motif
Other DBs
NCBI-ProteinID:
ADU80975
LinkDB
All DBs
Position
125582..127789
Genome browser
AA seq
735 aa
AA seq
DB search
MKHLIIVESPAKAKTIKNFLDKNYEVIASKGHVRDLSKFALGIKIDETGFTPNYVVDKDH
KELVKQIIELSKKASITYIATDEDREGEAIGYHVACLIGGKLESYPRIVFHEITQNAILN
ALKTPRQIDMSKVNAQQARRFLDRIVGFKLSSLISSKITKGLSAGRVQSAALKLVIDRER
EIKAFKPLTYFTLDALFEPHLEAQLISYKGNKLKAQELIDEKKAQEIKNELEKESYIISS
IVKKSKKSPTPPPFMTSTLQQSASSLLGFSPTKTMSIAQKLYEGVATPQGVMGVITYMRT
DSLNIAKEALEEARNKILKDYDKDYLPPKAKVYSSKNKNAQEAHEAIRPTSIILEPNALK
DYLKPEELKLYALIYKRFLASQMQDALFESQSVVVACEKGEFKASGRKLLFDGYYKILGN
DDKDKLLPNLKENDPIKLEKLESNAHVTEPPARYSEASLIKVLESLGIGRPSTYAPTISL
LQNRDYIKVEKKQISALESAFKVIEILEKHFEEIVDSKFSASLEEELDSIAQNKADYQQV
LKDFYYPFMDKIEAGKKNIISQKVHEKTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKY
IKQTENADNEATQELCEKCGGEMVQKFSRNGAFLACNNYPECKNTKSLKNTPTKETIEGV
KCPECGGDIALKRSRKGSFYGCNNYPKCNFLSNHKPINKRCEKCHYLMSERMYRKKKAHE
CIKCKERVFLEEDNG
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaccttattatcgtagaatcccccgcaaaagccaaaaccattaaaaattttttg
gataaaaattatgaagtcatcgcctctaaagggcatgtcagggatttatccaaattcgct
ttaggcattaagattgatgaaaccggcttcactcctaattatgtcgtggataaagaccat
aaggaacttgtcaagcaaatcatagagctttctaaaaaagcgtccattacttatatcgct
accgatgaagacagagaaggggaagcgataggctatcatgtggcatgtttgattggaggg
aaattggagagctatcctaggattgtttttcatgagatcacgcaaaatgcgattttaaac
gccctaaaaaccccacgacaaattgacatgtctaaggtcaatgcccaacaagccaggcgt
tttttagatcggatcgtgggtttcaagctcagctcgttgatttcatctaaaatcactaaa
ggcttgagcgctgggcgggtgcaaagcgcggctttaaagcttgtgattgatagagagagg
gaaatcaaagcctttaagcctttaacctacttcacgctagacgctttgtttgagccgcat
ttagaagcgcaactcatcagctataagggcaacaaactcaaagcccaagaactcattgat
gaaaaaaaagcccaagagattaaaaacgaattggaaaaagaaagctatattatttctagt
atcgttaaaaaatctaaaaaatcccccacaccgccccctttcatgacttccactttacag
caaagcgcttccagtctcttaggcttttcgcccacaaaaaccatgagtatcgctcaaaaa
ttatatgagggcgtagccaccccacaaggcgttatgggggtgatcacttacatgagaacg
gatagcttgaatatcgctaaagaggctttagaagaagcgaggaataagattttaaaagac
tatgacaaagactacttgccccctaaagccaaagtctattccagcaagaataaaaacgcc
caagaagcccatgaagcgatcaggcccacttccattattttagagccaaacgccttaaaa
gactaccttaagcctgaagaattaaaactctatgccttaatttacaaacgcttcttagct
tctcaaatgcaagacgctctttttgaaagccaaagcgtggttgtggcttgtgaaaagggc
gagtttaaagctagtgggagaaaactcctttttgatggctattataaaatcttaggcaat
gacgataaggacaaattgctccctaatttgaaagaaaatgaccccattaaattagaaaaa
ctagagagcaacgcccatgttacagaacccccagcgcgttattcagaagcgagtttgatt
aaagttttagagagtttaggcataggcaggcccagcacctacgccccaacgatttccctt
ttacaaaacagagactacatcaaggtagaaaaaaagcagatcagtgctttagagagcgct
tttaaagtgatagaaattttagaaaagcattttgaagaaatcgtggattccaaattcagc
gcttctttagaagaagaactagacagtatcgctcaaaataaagccgactaccagcaagtc
ttaaaggatttttactacccctttatggataaaattgaagccgggaaaaaaaacatcatc
tctcaaaaagtgcatgaaaaaaccggccaatcatgccctaaatgcgggggggaattagtc
aaaaagaatagccgttatggggagtttatcgcttgtaacaattaccctaaatgcaaatat
atcaaacaaactgaaaacgctgataatgaagccacgcaagaattgtgcgaaaaatgcgga
ggggaaatggtgcaaaaattcagcagaaacggggcgtttttagcttgcaacaactaccct
gaatgcaaaaacaccaaatcgttaaaaaacacccctacaaaagaaacaatagaaggcgtg
aaatgcccagaatgcgggggggatattgccttaaaaaggagcaggaaaggctcgttttat
ggctgtaacaactaccctaaatgcaattttttatccaaccataagcccatcaacaaacgc
tgcgaaaaatgccattatttgatgagtgaaagaatgtatcgcaaaaaaaaggcgcatgaa
tgcatcaaatgcaaagaacgcgtgtttttagaggaagataatggctaa
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