Helicobacter pylori Gambia94/24: HPGAM_01405
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Entry
HPGAM_01405 CDS
T01917
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
heg
Helicobacter pylori Gambia94/24
Pathway
heg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
heg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPGAM_01405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
heg03019
]
HPGAM_01405
03009 Ribosome biogenesis [BR:
heg03009
]
HPGAM_01405
Enzymes [BR:
heg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPGAM_01405
Messenger RNA biogenesis [BR:
heg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPGAM_01405
Ribosome biogenesis [BR:
heg03009
]
Prokaryotic type
rRNA helicases
HPGAM_01405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
UvrD-helicase
P-loop_SecA
AAA_30
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ADU81129
LinkDB
All DBs
Position
271192..272667
Genome browser
AA seq
491 aa
AA seq
DB search
MELNQPPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNADITQRFYVIN
EHERAEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSI
MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKPPNKKTQHEPAHSFKKSHHRDRHPK
TNRYSKKPKRR
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggaattgaatcaaccaccactccctacagaaattgacgatgacgcttatcataagcct
agttttaatgacttgggcttaaaagaatcggttttaaaatccgtctatgaagccggtttc
acttccccaagccccattcaagaaaaggccattccggctgttttacaaggccgagatgtc
atcgcgcaagcccaaacaggcacaggaaaaaccgccgctttcgctctgcccattatcaat
aaccttaaaaacaaccacaccatagaggccttagtgatcacgcccaccagagaattagcc
atgcaaattagcgatgagatttttaaattgggcaaacacaccaggactaaaaccgtgtgc
gtgtatggaggccagagcgttaaaaaacaatgcgaattcattaagaaaaacccccaagtg
atgatcgccacgccaggaaggctattggatcatttaaaaaacgagcgcatccataaattt
gtgcctaaagtggtcgttttagatgaaagcgatgaaatgctggatatggggtttttagac
gatattgaagagatttttgactacctccctagcgaagcgcagattttgcttttttcagcc
acgatgccagagccgattaaaagattagcagataagattttagaaaaccctattaaaatc
catattgccccctctaatatcactaacgctgacatcacccaacgcttttatgtgatcaac
gagcatgagagggctgaagcgatcatgcgccttttagacacccaagcgcctgaaaagagc
attgttttcacgcgcaccaaaaaagaagccgatgaattgcaccaattccttgcttctaaa
aattacaaaagcaccgccttgcatggggatatggatcaaagggatcgccgctcttctatc
atggcgtttaaaaaaaatgacgctgacgtgttggtggctacggatgtggcgagccgtggg
ctagacattagtggtgtaagccatgtgtttaactaccacttgcccctaaacactgagagc
tatatccatcgcattgggagaaccgggcgagcgggcaaaaaaggcatggcgatcacttta
gtaacccctttagaatacaaagagcttttacgcatgcaaaaagaaattgattcagagatt
gaactttttgaaatccccaccattaacgaaaatcagatcatcaaaaccttgcatgacgct
aaagtgtctgaagggatcatcagcctttatgaacagcttaccgaaatttttgagccgtct
caattggttttaaaacttttgagtttgcagtttgagaccagtaaaattggcttgaaccag
caagagattgatgcgattcaaaaccctaaagaaaaaacgccaaaacccccaaacaaaaaa
acgcagcacgagccagcacactcttttaaaaagagccaccacagagacagacaccctaaa
acgaatcgttattctaaaaaacccaaacgccgttaa
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