Helicobacter pylori Gambia94/24: HPGAM_06195
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Entry
HPGAM_06195 CDS
T01917
Name
(GenBank) bifunctional DNA-directed RNA polymerase subunit beta/beta'
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
heg
Helicobacter pylori Gambia94/24
Pathway
heg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
heg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPGAM_06195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
heg03021
]
HPGAM_06195
03400 DNA repair and recombination proteins [BR:
heg03400
]
HPGAM_06195
Enzymes [BR:
heg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPGAM_06195
Transcription machinery [BR:
heg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPGAM_06195
DNA repair and recombination proteins [BR:
heg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPGAM_06195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ADU82022
LinkDB
All DBs
Position
complement(1259441..1268113)
Genome browser
AA seq
2890 aa
AA seq
DB search
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQ
DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSSNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDPQGKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLA
EPVMVGKEVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIHSFSADHESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEK
IIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPI
VKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDVFTS
THIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYE
EEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASIN
RFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKMLEIANAINEKDPLTIHVLESCSDEE
LLEYAKDWSKSVKIAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDG
APKPIMIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRY
EDRGFIAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDYVHKVGGIGITATFLDHLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDRMSKEMMSAIAKDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELRLETVYEEVVVSVKNGDQEAKFVLRRSDIVKPSELAG
VGGKIEGKVYLPYANGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAK
EKGVIKYYVLEANHLERTHGVKKGDIVSEKGLFAVVADDNGREAARHYIARGSEILIDDN
SEVSANSLISKPTTNTFKTIATWDPYNTPIIADFKGKVSFVDIIAGVTVAEKEDENTGIT
SLVVNDYIPSGYKPSLFLEGANGEEARYFLEPKTSIAISDGSSVEQAEVLAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKSIRNKEHIIVTSKDGRLTDYFV
DKGKQILVHADEFVHAGEAMTDGVVSSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIV
LRALEDNSKF
NT seq
8673 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccaaca
gatttagaagttcctaatttattattattacaacgagacagctacgattctttcttgtat
tccaaagatggcaaagagagtgggattgaaaaggtttttaaatccattttccctattcaa
gatgagcataaccgtatcactttggaatacgcgggttgcgaatttggcaagtctaaatac
actgttagagaagcgatggagaggggcattacctactctatccctctcaaaattaaagtg
cgcttgatcttgtgggaaaaagacaccaaaagtggcgaaaagaacggcattaaggatatt
aaagagcaaagcattttcattcgtgagatccctttaatgacagaacgcacttcgtttatc
attaatggggtggagcgcgtggtggtcaatcagctccacagaagccccggtgtgattttt
aaagaagaagaatctagcacttcttcaaacaaactcatttacacagggcaaatcattcct
gataggggttcgtggttgtattttgaatacgattctaaagatgttttgtacgctcgtatc
aacaaacgccgtaaagtgcctgttaccattttattcagggcgatggattatcaaaaacaa
gacatcattaaaatgttctacccgcttgtgaaagtgcgttatgaaaacgataaatatttg
atcccgtttgcttcactagatgccaatcaaagaatggaatttgacttgaaagaccctcaa
ggcaagatcattcttttagcgggtaaaaagctcacttcaagaaagattaaagagcttaaa
gaaaaccatttagaatgggtggaataccctatggatattttactcaatcgtcatttagct
gagcctgttatggtagggaaagaagttttattggacatgctcacgcagttggataaaaac
agactagaaaaaatccacgatttaggcgtgcaagaatttgtgatcattaacgatctagcg
ttagggcatgacgcttccattatccattctttctcagctgatcatgagtctttgaaattg
ctcaagcaaactgaaaagattgatgatgaaaacgctctagcggcgattcgtatccataag
gttatgaaaccaggcgatcctgttacgactgaagtggctaagcaatttgtcaagaaactt
ttctttgaccctgaacgctatgatttgaccatggtgggccgtatgaaaatgaatcacaag
ttaggcttgcatgtgcctgattacatcacgactttaacgcatgaagatattatcaccacc
gttaaatacctcatgaagatcaaaaacaatcaaggcaagattgatgatagggatcactta
ggcaatcgtaggatcagagcggtaggggaattactagccaatgaattgcattcaggctta
gtgaaaatgcaaaagaccattaaagacaagctcaccaccatgagcggggcttttgattcg
ctcatgccccatgatttagtcaattctaaaatgatcacaagcaccatcatggaatttttc
atgggcggtcagctctcgcaattcatggatcaaaccaaccctttgagtgaggttacgcac
aaacgacgcctttcagcactcggtgaaggggggttagtgaaagatagggtagggtttgaa
gctagggatgtgcaccccacgcattatggccgaatttgccccattgaaaccccagaaggt
caaaatatcggtttgatcaacaccctttccactttcacaagagtgaatgatttaggcttt
attgaagccccttataaaaaggttgtggacggcaaggtggtaggcgagacgatttatttg
accgctattcaagaagacagccacatcatcgctcccgcaagcacccccattgatgaagag
gggaatattttaggcgacttgattgaaacgcgcgtggaaggcgagatcgttttaaacgaa
aaaagcaaagttaccttaatggatttaagctctagcatgttagtaggggtcgccgcatcg
ctcattcctttcttagagcatgatgacgctaaccgcgctctaatggggactaacatgcag
cgccaagccgtgcctttgttaagaagcgacgctcccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggggcgatcaaggccaatcgcgcaggcgttgtagaaaaa
attgattctaaaaacatttatattttaggcgaaggcaaagaagaagcctatattgacgcg
tattctttgcagaaaaacttgcgcaccaaccaaaacaccagtttcaatcaagtccctatc
gttaaagtgggcgataaagtggaagccgggcaaatcatcgctgatggccctagcatggac
agaggcgagttagcgttagggaaaaatgtgcgcgtggcgttcatgccttggaatggttat
aactttgaagacgcgatcgtggtgagtgaacgcatcactaaagacgatgttttcacttcc
acgcacatttatgaaaaagaagtggatgccagagagcttaagcatggcgtggaagaattt
accgctgatattcctgatgtgaaagaagaagcgctcgctcatcttgatgaaagcgggatc
gttaaagtcggcacttacgtgagcgctggcatgattttagtgggcaagacttctcctaaa
ggcgagattaaaagcacgcctgaagagcggctcttaagggctatttttggggataaagcc
ggtcatgtggtcaataagagtttgtattgcccccccagtttggaaggcacggtgattgac
gtgaaggtattcactaaaaaaggctatgagaaagacgcgcgggttttgagcgcgtatgaa
gaagaaaaagccaagcttgatatggagcattttgaccgcttgaccatgctcaatagagaa
gagttgttgcgcgtcagttcgctcctttctcaagcgattttagaagagcctttcagccat
aatggtaaggattataaagaaggcgatcaaatccctaaagaagaaatcgcttcaatcaac
cgcttcactttggctagtttagtcaaaaagtattctaaagaagtgcaaaaccactatgaa
atcactaaaaacaatttcttagagcaaaagaaagttttaggcgaagagcatgaagaaaag
ctctctattttagaaaaagatgatattttgcctaacggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatatcgtgccggttgcagatatgccttataccgctgatggcgag
cctgtggatattgtcttaaaccctttaggcgtgccaagccgcatgaacattgggcagatt
ttagaaatgcatttaggcttagtggggaaagaatttgggaagcaaatcgctagcatgcta
gaggataaaaccaaagattttgccaaagaattgcgcgctaaaatgctagagatcgctaac
gccattaatgaaaaagaccccttgacaatccatgttcttgagagttgctctgatgaagag
cttttggaatacgccaaagattggagcaagagcgttaagatagctatccctgtgtttgaa
ggcatctcgcaagaaaaattttacaagctgtttgaattagccaagatcgctatggatggc
aaaatggatctgtatgatgggcgtaccggcgaaaaaatgagggagcgcgtgaatgtgggc
tatatgtatatgatcaaactccaccatttagtggatgaaaaagttcatgccagaagcaca
ggcccttatagcttagtaacgcaccaacccgttgggggtaaagcgctctttgggggtcaa
aggtttggggaaatggaagtgtgggctctagaagcttatggcgcggcgcacactctcaaa
gaaatgctcaccattaaatccgatgatattagaggcagagagaacgcttatagggctatc
gctaaaggtgagcaagtgggcgagagcgaaatccctgagactttctatgtcttgactaaa
gaattgcaatcgctcgctttggatattaatatttttggggacgatgtggatgaggatgga
gcgcctaaacccattatgatcaaagaagatgacaggcctaaagactttagctctttccaa
ctcactctagccagccctgaaaaaatccattcttggagctatggggaagttaaaaagcca
gaaacgatcaattatcgcaccctaaaacctgaacgagacggcttgttttgcatgaaaatc
tttggccctactaaagattatgaatgcttgtgtggtaaatacaaaaagcctcgcttcaaa
gacattggcacatgcgaaaaatgcggcgtggcgatcacgcattctaaagtcaggcgtttt
agaatggggcatattgaattggccactcctgtagcgcatatttggtatgtcaattcctta
cctagccgtatcggcacgcttttgggtgttaagatgaaagatttagagcgcgtgctgtat
tatgaagcttatatcgttaaagagccaggcgaagccgcttatgacaatgaaggcactaag
cttgtgatgaaatacgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagataggggctttatagcgcaaatgggcggcgaagcgatcaaggatttgttagaagaa
attgatttgatcaccttattgcagagtttgaaagaagaagtgaaagacactaactctgat
gcgaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttgaattctggt
aacaggcctgaatggatgatgctcacggttttaccggtattgccaccggatttaaggcct
ttagtcgcgctagatggcgggaagtttgcggtcagcgatgtgaatgaattgtatcgtcgt
gtcatcaatcgtaaccaacgcttgaaacgcctaatggagcttggagcgccagaaatcatt
gtgcgcaatgaaaaaaggatgttgcaagaagccgtggatgtgctttttgataacggccgc
agcaccaatgcggttaaaggggctaacaaacgccctttaaaatcgctcagcgaaatcatt
aaaggcaagcaagggcgttttaggcaaaaccttttaggtaagcgcgtggatttttcaggc
agaagcgtgattgtggttgggcctaatcttaaaatggatgaatgcgggttgcctaaaaac
atggcgttagagctcttcaaaccgcatttgttatccaagcttgaagagagaggctatgcc
accacgctcaaacaggctaaacgcatgattgagcaaaagagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaggggtatccggtgttactcaaccgcgcccctaccttacacaag
caatccattcaggcgttccatccaaagctgattgacggcaaagcgatccagttgcacccg
ttagtgtgctcagcgtttaacgccgattttgacggggatcaaatggcggtgcatgtgcct
ttaagccaggaagcgatcgctgaatgcaaggtgctcatgctaagctctatgaacatcctt
ttacccgctagcggtaaagccgtagccattcctagccaggatatggttttagggctatat
tatctttctttagaaaagagtggggtcaagggcgagcataagcttttttctagcgtgaat
gaaatcatcaccgctattgataccaaagaattagacatccacgcaaagattagggtttta
gatcaagggaatattatcgctacgagcgcggggcgcatgattattaaatccattttgcct
gattttatccctacggatttgtggaacagacccatgaagaaaaaggatattggcgtgctt
gtggattatgtgcataaagtgggcggtatcggtattaccgcaacctttttggatcatttg
aaaacgcttggctttaggtatgcgactaaggctggtatttctatctctatggaagatatt
atcacgccaaaagacaagcaaaaaatggtggaaaaagccaaagtggaggttaaaaaaatc
caacaacaatacgatcaagggttgctcactgaccaagagcgttacaataaaatcattgac
acttggactgaagtcaatgacagaatgagtaaggaaatgatgagcgctatcgcaaaagat
aaagagggctttaactctatttatatgatggcggatagcggtgcaagggggagcgcggcg
caaatccgtcagctttcagcgatgagagggcttatgacaaagccggatggcagtatcatt
gaaacgcccattatttctaactttaaagaggggttgaatgtcttagaatactttaactcc
acgcatggcgctagaaagggcttagcggatacggcgttaaaaacagccaatgcagggtat
ttgacaagaaaactcattgacgtttcgcaaaatgtcaaggtggtgtctgatgattgcggc
acgcatgaagggattgaaatcacggatattgcggtggggagtgagctgattgaaccttta
gaagagcgtatttttgggcgcgttttattagaagatgtgatcgatcccattacgaatgaa
atcttgctttatgcggacactttgattgatgaagagggcgctaaaaaggtggttgaagct
gggattaaatccattacgatccgcaccccagtaacttgtaaagcgccaaagggcgtgtgc
gcgaaatgctatggcttgaatttaggcgaaggcaagatgagctatccgggtgaggcggta
ggcgtggtagccgcgcaatctatcggagagcctggaacgcagctcactttaaggactttc
catgtgggcgggacagcgagcaggagtcaggatgagcgcgaaatcgtggcgagcaaagaa
ggttttgtgcgcttctacaaccttaggacttacacgaataaagagggtaaaaacattatc
gccaaccgccgtaacgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattacgccttgaaacggtttatgaagaagttgttgtgagcgtgaaaaatggcgat
caagaagctaaattcgttttaagaagaagcgatattgtcaaaccaagcgaattagccggc
gttggcggtaagattgaggggaaagtgtatttgccttacgctaacgggcataaggtgcat
aaggggggaagtatcgctgatattatccaagagggctggaatgtgcctaatcgcatccct
tatgcgagcgaattgctagtcaaggataatgaccctatcgcgcaagatgtgtatgccaaa
gaaaaaggcgtgatcaaatactatgttttagaggccaatcatttagagcgcacccatgga
gtcaaaaagggcgatattgtgagcgaaaaaggcttgtttgcggtggtagctgatgataat
ggcagggaagccgctcgccattatatcgctaggggttctgagatcttgattgatgataat
agtgaagtgagcgctaatagccttatttctaaacccacgaccaacactttcaaaacgatc
gccacatgggatccttataacacccctatcattgcggactttaagggtaaggtgagtttt
gtggatattatcgcaggggttacggtcgctgagaaagaagacgaaaataccggtatcaca
agcctagtggtgaatgattacattccaagcgggtataaaccaagcttgtttttagagggg
gctaatggcgaagaagcgcgttatttcctagagccaaaaacttctatcgctattagcgat
ggctctagcgtggagcaggctgaagtgttagcgaaaatccctaaagcgaccgttaaatcc
agggatattaccggaggtctcccaagggtttctgaactctttgaagcgagaaagcctaaa
cctaaagacgtggcgatcctttctgaggttgatgggattgtgagttttggcaaatctatc
cgcaataaagaacacatcatcgtaacttccaaagatggtcgtctcacagattactttgtg
gataagggcaagcaaattttagtgcatgccgatgaatttgtgcatgcgggagaggcgatg
acggatggggtggtttcaagccatgatattttaaggatcagcggcgaaaaagagctttat
aaatacattgtgagcgaggtccagcaagtgtatcgcaggcagggggtaagcattgcggac
aaacacattgaaatcattgtgtctcaaatgttaaggcaagtgcgcattttagacagcggg
gatagcaagtttattgaaggggatttggtcagtaaaaaactcttcaaagaagaaaacgct
cgtgtgatcgctttaaaaggcgagccagcgattgctgaaccggtgcttttagggatcact
agagcggctattgggagcgatagcatcatttcagcggcctctttccaagaaacgactaag
gttttaacagaagccagtattgcgatgaaaaaagactttttagaagatttgaaagagaat
gtggtgttgggaaggatgatccctgtgggaacgggcatgtataagaataaaaaaatcgtg
ttaagagcgcttgaggataactctaaattttga
DBGET
integrated database retrieval system
