Helicobacter pylori Gambia94/24: HPGAM_07685
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Entry
HPGAM_07685 CDS
T01917
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
heg
Helicobacter pylori Gambia94/24
Pathway
heg03030
DNA replication
heg03430
Mismatch repair
heg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
heg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPGAM_07685 (dnaE)
03430 Mismatch repair
HPGAM_07685 (dnaE)
03440 Homologous recombination
HPGAM_07685 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
heg03032
]
HPGAM_07685 (dnaE)
03400 DNA repair and recombination proteins [BR:
heg03400
]
HPGAM_07685 (dnaE)
Enzymes [BR:
heg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HPGAM_07685 (dnaE)
DNA replication proteins [BR:
heg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HPGAM_07685 (dnaE)
DNA repair and recombination proteins [BR:
heg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HPGAM_07685 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ADU82310
LinkDB
All DBs
Position
complement(1544153..1547788)
Genome browser
AA seq
1211 aa
AA seq
DB search
MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK
EGIKPIIGMEAYIHNDDNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGFYYFPR
INKKLLREHSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKRIACEYQEIFEDD
FYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTL
NDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPPS
FKFTKAYAKEEGLDFEDDASYFAYKAREGLKERLILVPKEKHDQYKERLEKEIEVITNMK
FPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFLNPER
VSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPYKEA
DDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKQVWEYSLNLENLNR
NAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLKTLTVI
DDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGLNKRLRPSSFE
DIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTIVYQEQVMQIV
QTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANLWDLIVKFAGY
GFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEVRALEIEVMPP
HINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKGDYKSLEDFIS
RVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANEMMQGGNSLFG
AMEGGTKEQVILDMADLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIKGFKNLVKSID
IEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLFEKQLNALEELDI
NKPLVFKCKIEEQEEVARLRLFEILDLESAREVKIPKARYKDPEKQKEDVREIPPMEMLA
SSSCSLAIVLENDVKKEFLRQIKESALKHQGKRPLYLIIKDKDKQFKIQSDLMVNEKIKD
DFKELEWRDLA
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagaataaagcctttacgcatttgcacttgcacacagaatattcgcttttagat
ggggcgaacaagattaaaatcttagccaaacgcattaaagaattgggcatgaaaagcgtg
agtgtaaccgaccatgggaacatgtttggagcgattgatttttacacgagcatgaaaaaa
gaaggcatcaagcctatcattggcatggaagcgtatatccataacgatgacaacctctcc
agcaaagaaaccaagcagcgtttccatttgtgcctgttcgctaaaaaccaagagggctat
gaaaacttgatgttcttaagctctatggcgtatttagaagggttttattattttccgcgc
atcaataaaaagcttctaagggagcattctaaaggcattatcgcttctagcgcatgcttg
caaggggaagttaattaccatttgaatactcataatgagagaaaccgcaagtatggggct
aaaggctatgatgaagctaaaagaatcgcttgcgaataccaggagatttttgaagacgat
ttttatttagaaatcatgcgtcatggcattttagatcagcgattcattgatgagcaagtc
attaaaatgtctttagaaacagggttaaaaatcattgccaccaacgacacccactacacc
atgcctaatgacgctaaggctcaagaagtagcgatgtgcgtagcgatgggtaaaacccta
aacgataaggggcgcttgaaacactccgtgcatgagttttacattaaatcccccgaagaa
atggcgaagctgtttgcggatattccagaagctttagaaaacacccaagaaatcgctgat
aaatgcgttttagagattgatctaaaagacgataaaaagaaccccccaacccccccaagc
ttcaaattcaccaaagcttacgctaaagaagaggggctagattttgaagatgacgcttct
tatttcgcctataaggctagagaaggcttgaaagaacgcttgatcttagtgccaaaagaa
aagcacgatcaatacaaagagcggctagaaaaagaaattgaagtcatcacgaacatgaaa
ttcccagggtatatgctgatcgtgtgggattttatccgttacgctaaagaaatgggtatt
cctgtggggcctggtagggggagtgcggccgggagtttggtggcttttgccttaaaaatc
acggacattgaccctttgaaatacgatttgctctttgaaaggtttttaaaccctgaacga
gtcagcatgcctgatattgatacggatttttgccagcgccggcgtaaggaaatcatagaa
tacatgattgaaaaatacggcaaatacaatgtggcgcaagtcatcacctttaataagatg
ttggctaaaggggtgattagagatgtcgcaagggttttggacatgccttataaagaggct
gatgattttgccaaactcatacccaaccgcttaggaatcacgcttaagggctatgaaaaa
aatggcgagttcatagagggggcgtgggaattagagcctaaaatcaaggaattggtggag
agcaatgaagtggccaaacaagtgtgggagtattcgctcaatttagagaatttgaatcgc
aacgcaggcgtgcatgccgcagccttagtggtggatagccaaaaagagttgtggcacaaa
acccctttatttgcctctgaaaaaaccggcggtatcgttacgcaatattccatgaagtat
ttagagccggtggatttgatcaagtttgacttcttggggcttaaaaccttgaccgtgatt
gatgatgcgcttaaaatcattaaaacgcaacataacattgatgtggattttttatcgttg
gatatggacgatccgaaagtgtataaaacgatccaaagcggggatacggtggggatcttc
cagattgaatccgggatgtttcaagggcttaacaagcgcttaaggccttcaagctttgaa
gacattatcgccattatcgcgctaggcagaccggggcctatggaatcaggcatggtagat
gattttgtgaacagaaagcatggcgttgagcctatcgcttatgcgtttaaagaattagag
ccgattttaaagcccacctacggcacgatcgtctatcaggagcaggtgatgcaaatcgtg
caaactatcggcggttttagtttgggtgaagcggatttgatccgtcgcgctatggggaaa
aaagacgctcagatcatggcggacaataaggcgaagtttgtagaaggtgctaaaaattta
gggcatgatggccaaaaagcggctaatttgtgggatttgatcgttaaatttgccggctat
ggtttcaacaaatcgcattcagccgcttatgcgatgatcactttccaaacggcgtattta
aagacttattacaagcacgagttcatggcagcgatgctcactagcgaatccaataagatc
gaatccgtggcgcgctatattgatgaggttagggctttagaaattgaagtgatgcctccg
cacatcaattcttctatgcaagatttcagcgtggcggagtttaaaaatcaaaagggcgag
ttagaaaagaaaatcgtgtttggtttgggagcggttaaaggggttgggggtgagccgatt
aaaaacatcattgaagaaagggctaaaggggattataagagtttggaagatttcatttca
cgggtggatttttccaaactcactaaaaaatctttagagccattggtgaaatcagggagc
ttggacaatttaggctacactagaaaaaccatgctcgctaacttggatttgatctgcgat
gccgggcgcgctaaagacaaggctaatgaaatgatgcaagggggtaactccctttttgga
gccatggaaggcggaactaaagagcaggttattttggatatggctgatttgggcgagcat
gacgctaaaacgcttttagaatgcgaatatgaaactttaggaatccatgtttcaggcaac
cctttagacgagtttaaagaagaaattaagggctttaaaaatttagtcaaaagcattgat
attgaagagctagagattggctcgcaggcttatttgctgggtaaaatcatggaggttaaa
aagaaaattggcaaacgaagcggtaagccttatggcacagcggacattttggatcgatac
ggcaagtttgaactcatgctttttgaaaagcaactaaacgccttagaagagttggatatt
aataagcccttagtgtttaaatgcaagattgaagagcaagaagaggtggcacgattgagg
ctttttgaaatcttggatttagagagtgctagggaggttaaaatccctaaagcccgctat
aaagaccctgaaaagcaaaaagaagatgtgcgcgaaatcccccccatggaaatgctcgcc
tccagttcttgctctttggcgatcgtgttagaaaacgatgtgaaaaaagagtttttaaga
caaatcaaagagagcgctctaaaacaccagggtaaacgccccttgtatttgatcatcaaa
gataaggataagcaattcaaaatccaaagcgatctaatggtaaatgaaaagattaaggac
gattttaaagaattagagtggagggatttagcttga
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integrated database retrieval system
