Herbiconiux sp. L3-i23: L3i23_11050
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Entry
L3i23_11050 CDS
T08550
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
heh
Herbiconiux sp. L3-i23
Pathway
heh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
heh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3i23_11050 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
heh03019
]
L3i23_11050 (deaD)
03009 Ribosome biogenesis [BR:
heh03009
]
L3i23_11050 (deaD)
Enzymes [BR:
heh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L3i23_11050 (deaD)
Messenger RNA biogenesis [BR:
heh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L3i23_11050 (deaD)
Ribosome biogenesis [BR:
heh03009
]
Prokaryotic type
rRNA helicases
L3i23_11050 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
Cas3-like_C_2
adh_short
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
BDI22329
LinkDB
All DBs
Position
complement(1172611..1174395)
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AA seq
594 aa
AA seq
DB search
MSSDASPETEQPEPTEPTQNFSDLGLSDPVLKALKDVGYETPSAIQAATIPLLLEGRDVI
GMAQTGTGKTAAFALPILSRLDVSQSTPQALVLAPTRELALQVCEAFESYAGHLRGVHVL
PVYGGQGYGTQLSALRRGVHVVVGTPGRIMDHLDKGTLDLSELKYLVLDEADEMLKMGFA
EDVETILADTPDDKQVALFSATMPAQIRRISNQYLRDPEEISVKNKTTTSANITQRYLVV
SYAQKVDALTRILEVENFEGMIVFVRTKNETETLAEKLRARGYTAAAISGDVAQAQREKT
VNQLKSGKLDILVATDVAARGLDVDRISHVVNFDLPIDTESYVHRIGRTGRAGRTGDAIS
FVTPRERRMLSSIERATRQPLTQMQLPTAEDVNATRLTRFDDSITAALEQTTRIARFRDI
IAHYVEHHDVPEADVAAALAVVAQGEEPLLLDPNADRAPQRFDRDDRQRGGDRDGGDRDG
GGERAERRRRPAGSPLVKYRLAVGRRHKVEPRQIVGALANEGGLRREDFGQIDIRPDFSL
VELPADLPNETLDRLSGTRISGKLIEMRLDRGAPGGRRDRQDRDERPPRKPRHR
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccgacgcttcacccgagaccgaacagcccgaaccgacggagccgactcagaac
ttctccgacctcggcctgtccgaccccgtcctcaaagcactgaaggacgtcggttacgag
accccgtcggccatccaggcggcgaccatcccgctgctgctcgaaggccgcgacgtcatc
ggcatggcgcagaccggcaccggcaagaccgcggcgttcgcgctgcccatcctgtcgcgt
ctcgacgtgtcgcagagcaccccgcaggcgctggtgctcgcccccacccgcgagctggcg
ctgcaggtctgcgaggcgttcgagagttacgccggtcacctccgcggcgtccacgtcctc
cccgtctacggcgggcagggctacggtacccagctgtccgcgctgcgccgcggcgtgcac
gtcgtcgtcggcacccccgggcgcatcatggaccacctcgacaagggcaccctcgacctg
tccgagctgaagtacctcgtgctcgacgaggccgacgagatgctcaagatgggcttcgcg
gaggatgtcgagacgatcctcgccgacacccccgacgacaagcaggtcgccctgttctcc
gcgaccatgcccgcgcagattcgccgcatctcgaaccagtacctgcgcgatcccgaagag
atcagcgtcaagaacaagacgacgacgtcggcgaacatcacccagcgctacctggtcgtc
tcgtacgcgcagaaggtcgacgccctcacccgcatcctcgaggtcgagaacttcgagggc
atgatcgtcttcgtccgcaccaagaacgagaccgagaccctcgccgagaagctgcgcgcc
cgcggatacacggcggccgcgatcagcggcgacgtcgcgcaggctcagcgcgagaagacg
gtcaatcagctgaagtcgggcaagctcgacatcctcgtcgccaccgacgtcgccgcgcgc
ggactcgacgtcgaccgcatcagccacgtcgtgaacttcgacctgccgatcgacaccgag
tcgtacgtgcaccgcatcggccgcaccggtcgtgccggccgcaccggtgacgcgatcagc
ttcgtcactccccgtgagcggcggatgctgtcgtcgatcgagcgcgccacccgtcagccg
ctgacccagatgcagctgcccaccgccgaggacgtcaacgcgacgcggctgacccgcttc
gatgactcgatcacggcggcgctcgagcagacgacccgcatcgcccggttccgggacatc
atcgcccactacgtcgagcaccacgacgtgcccgaggccgatgtcgcggcggcgctcgcg
gtggtcgcgcagggcgaggagcctctcctgctcgacccgaacgccgaccgcgcaccacag
cgcttcgaccgcgacgaccgtcagcgcggcggcgaccgcgatggcggcgaccgcgacggc
ggcggggaacgcgccgagcgtcgacgccgcccggccgggtcgccgctggtgaagtaccgt
ctcgccgtcggccgccgtcacaaggtggagccgcggcagatcgtcggcgctctcgcgaac
gagggcggcctgcgccgtgaggacttcgggcagatcgacatccggccggacttctcgctg
gtggagctgccggcggatctgccgaacgagaccctcgaccgcctgtcgggcacccggatc
agcggcaagctgatcgagatgcgcctcgaccgcggcgcccccggcggccgccgcgaccga
caggaccgcgacgagcgcccaccccgcaaaccccgccaccgctga
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