Herbiconiux sp. L3-i23: L3i23_16170
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Entry
L3i23_16170 CDS
T08550
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
heh
Herbiconiux sp. L3-i23
Brite
KEGG Orthology (KO) [BR:
heh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
heh03016
]
L3i23_16170
Enzymes [BR:
heh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
L3i23_16170
Transfer RNA biogenesis [BR:
heh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
L3i23_16170
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Helicase_Sgs1
TPR_9
Motif
Other DBs
NCBI-ProteinID:
BDI22841
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Position
1717886..1719112
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AA seq
408 aa
AA seq
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MTAPLPTAQIARPVVLVADRSAYLDAVRSIAAGSGPVGVDAERASGFRYSQRAYLIQIYR
EGAGTFLFDPPAIGSFTELQDAIGDEEWILHAASQDLACLREVGLDPAVIFDTELAARLL
GLPRVGLAAVVEQLLGLHLAKEHSAADWSTRPLPASWLDYAALDVQLLPELRREVGALLE
QADKVAIAREEFDAVLARELPVARTDPWRKLSGVHTVKGVRGLAVARELWLARDDLARTL
DVSPGRLVPDSSLVSVARALPRTKRDLAALREFSGRASRSELDRWWAALERGLTTEDLPI
ARVPGDSMPPPRAWADRNPEADRRLKAARAATIEVAERLDMPVENLLTPDTLRRVAWQPP
VEVTDDSVAAALGALGARPWQISATVQSIVKAFVAARQEPAVVEETGS
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgctcccctgcccaccgcgcagatcgcgcgtcccgtggtgctcgtcgccgaccgg
tcggcctacctcgatgcggtgcgctcgatcgccgcgggctcgggcccggtcggagtcgat
gcggagcgtgcgagcggcttccggtactcccagcgcgcgtacctgatccagatctaccgc
gaaggcgccggcaccttcctcttcgacccgcccgccatcggctcgttcaccgaactgcag
gacgcgatcggcgacgaggaatggatcctgcacgccgccagccaggacctcgcctgcctg
cgcgaggtcggcctcgaccccgccgtgatcttcgacaccgagctcgccgcccggctgctc
ggactgccccgcgtcgggctcgccgccgtggtcgagcagctgctcggcctgcacctcgcc
aaggagcactcggccgccgactggtcgacgaggcccctgcctgcatcatggctcgactac
gccgcgctcgacgtgcagctcctgcccgaactgcgccgcgaagtgggcgcgctgctggag
caggccgacaaggtggcgatcgcccgcgaggagttcgacgcggtcctcgcccgcgaactc
cccgtcgcccgcaccgacccgtggcgcaagctctcgggtgtgcacaccgtcaagggcgtc
cgcggtctcgccgtcgcccgcgagctgtggctcgcccgtgacgatctcgctcgcaccctc
gacgtctccccgggacgcctggtgcccgactcctcgctcgtctccgtggcgcgagcgctg
ccgcgcaccaagcgcgacctcgccgcactgcgcgaattctcggggcgtgcgagccgcagc
gaactcgaccggtggtgggcggccctcgaacgcggactcaccacggaagacctcccgatc
gcgcgggtgcccggcgactcgatgccgcctcctcgcgcctgggccgaccggaatcccgaa
gcggatcggcgactgaaggcggcccgcgccgccaccatcgaggtcgccgagcgcctcgac
atgcccgtcgagaacctgctcacccccgacacgctccgccgcgtcgcgtggcagccaccg
gtcgaggtgaccgacgactccgtcgccgccgcgctcggcgccctgggggcacggccgtgg
cagatcagcgcgaccgtacaaagcatcgtgaaagcttttgtggcagctcgccaagagccc
gcggtggtcgaggaaaccggttcgtag
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