Herbiconiux sp. L3-i23: L3i23_27030
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Entry
L3i23_27030 CDS
T08550
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
heh
Herbiconiux sp. L3-i23
Pathway
heh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
heh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L3i23_27030 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
heh03021
]
L3i23_27030 (rpoB)
03400 DNA repair and recombination proteins [BR:
heh03400
]
L3i23_27030 (rpoB)
Enzymes [BR:
heh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L3i23_27030 (rpoB)
Transcription machinery [BR:
heh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L3i23_27030 (rpoB)
DNA repair and recombination proteins [BR:
heh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L3i23_27030 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BDI23927
LinkDB
All DBs
Position
complement(2847746..2851234)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAAANNATSTTPKNGRTASRLSFAKITDTLTVPDLLALQTESFDWLVGSDAWKERVVEGQ
AQGRTDLPTRSGLDEIFEEISPIEDLAETMQLSFTNPFLEEKKYTLDECKERGKTYAAPL
YVEAEFMNHLTGEIKTQTVFMGDFPLMTDKGTFIINGTERVVVSQLVRSPGVYFERQQEK
TSDKDIYSARVIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGLTSDEILENFQ
GYASIEATLEKDNILTKEEALKDIYRKLRPGEQVAAEAARALLDNFYFNGKRYDLAKVGR
YKINRKLGLDKPLSDSVLTVDDIIATIKYLVALHDNRTTLPGVRDGQPVELRLDVDDIDH
FGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFG
TSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPEGP
NIGLIGSLASFARINSFGFIETPYRKVVNGVVTDDIHYLTASEEDDYLVAQANAPLNADQ
SFAEAQVLVRPKGGEVELVDKDRVDYMDVSPRQMVSVATSLIPFLEHDDANRALMGANMQ
RQAVPLLRSESPLVGTGMEGYTAIDAGDVVIAEKAGVVAEVSADVVTVQLDEGGTQSYYL
RKFDRSNQGTSYNNRVVVDAGERVEAGQVIADGPATENGELALGKNLLVAFMPWEGHNFE
DAIILSQNLVKDDVLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPELLADLDERGIIRI
GAEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEEGTIIAVKE
FSAENDDELGSGVNQRVVVYIAQKRKITEGDKLAGRHGNKGVISKILPVEDMPFLADGTP
VDVVLNPLGIPGRMNFGQVLETHLGWAAKQGWKVDGSPEWAKRLPEQAHEAAPGTKVATP
VFDGALEEEIAGLLDSTTVNRDGERLIGSSGKAQLFDGRSGEPFPDPVSVGYMYILKLHH
LVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
ILGRVKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLSADGTAVSLRDTDDEVF
RAAEELGINISSRFESSSIDDI
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgcgaacaacgcaacgtccaccactcccaagaacggccgcaccgcatcgcgg
ctctcgttcgccaagatcaccgacaccctgacggttcccgatctgctcgcgctgcagacc
gagagcttcgactggctcgtcggttccgacgcgtggaaggagcgcgtcgtcgaagggcag
gcccagggccgcaccgacctgcccacccgcagcgggctcgatgagatcttcgaagagatc
tcgcccatcgaggacctcgccgagacgatgcagctgtcgttcacgaaccccttcctcgaa
gagaagaagtacaccctcgacgagtgcaaggagcgcggcaagacctacgccgccccgctg
tacgtcgaggccgaattcatgaaccacctcaccggtgagatcaagacgcagacggtcttc
atgggcgacttcccgctcatgaccgacaagggaaccttcatcatcaacggcaccgagcgc
gtcgtcgtgtcgcagctcgtccgttcgcccggcgtctacttcgagcgtcagcaggagaag
acctccgacaaggacatctactccgcccgcgtcatcccgagccgcggtgcgtggctcgag
ttcgagatcgacaagcgcgaccaggtcggcgtccgcatcgaccgcaagcgcaagcagagc
gtcaccgtcttcctcaaggccctcggtctgaccagcgacgagatcctcgagaacttccag
ggctacgcgtccatcgaggccaccctcgagaaggacaacatcctcacgaaggaagaggcc
ctcaaggacatctaccgcaagctccgcccgggcgagcaggtcgccgccgaggccgcgcgt
gcgctcctcgacaacttctacttcaacggcaagcgctacgacctcgccaaggtgggtcgt
tacaagatcaaccgcaagctcggtctcgacaagccgctcagcgactcggtcctgacggtc
gacgacatcatcgcgaccatcaagtacctcgtcgcgctgcacgacaaccgcaccaccctg
cccggtgtgcgcgacggtcagccggtcgagctccgcctcgacgtcgacgacatcgaccac
ttcggcaaccgtcgcatccgcgcggtcggcgagctgatccagaaccaggtccgcaccggt
ctgtcccgcatggagcgcgtcgtccgcgagcgcatgaccacgcaggacatcgaggcgatc
acgccgcagaccctgatcaacgtgcgccccgtcgtcgccgcgatcaaggagttcttcgga
acctcgcagctgtcgcagttcatggaccagaacaacccgctcgcgggtctgacccacaag
cgtcgtctctccgcgctcggccccggtggtctctcgcgtgagcgcgccggcgtcgaggtc
cgcgacgtccacccgtcgcactacggccgcatgtgcccgatcgagacccctgaaggcccg
aacatcggcctcatcggttcgctcgcctcgttcgcgcggatcaactcgttcggtttcatc
gagaccccgtaccgcaaggtcgtgaacggcgtcgtcaccgacgacatccactacctcacc
gcgagcgaggaggacgactacctggtcgcccaggccaacgccccgctgaacgccgaccag
tcgttcgccgaggctcaggtcctcgtccgccccaagggcggagaggtcgagctcgtcgac
aaggaccgggtcgactacatggacgtctcgccgcgccagatggtgtcggtggcgacctcg
ctgatcccgttcctcgagcacgacgacgcgaaccgcgccctcatgggtgcgaacatgcag
cgtcaggccgttccgctgctccgctccgagtcgccgctcgtcggcaccggtatggagggc
tacaccgccatcgacgcgggtgacgtcgtcatcgccgagaaggccggtgtcgtcgccgag
gtctcggccgacgtggtcaccgtccagctcgacgagggtggcacgcagagctactacctg
cgcaagttcgaccgctccaaccagggcacgtcgtacaacaaccgtgtcgtcgtcgacgcc
ggagagcgcgtcgaggccggccaggtcatcgccgacggtcccgcgaccgagaacggcgag
ctcgcgctcggcaagaacctgctcgtcgcgttcatgccgtgggagggtcacaacttcgag
gacgcgatcatcctcagccagaacctggtgaaggacgacgtcctctcctcgatccacatc
gaggagtacgaggtcgacgcccgcgacaccaagctgggcaaggaggagatcacccgcgat
ctgccgaacgtcagccccgagctgctcgccgacctcgacgagcgcggcatcatccgcatc
ggcgccgaggtccgtccgggcgacatcctcgtcggcaaggtcacgcccaagggcgagacc
gagctgtcggccgaggagcgtctgctgcgcgcgatcttcaacgagaagagccgcgaggtg
cgcgacacctcgctgaaggttcctcacggtgaagagggcacgatcatcgccgtcaaggag
ttctccgccgagaacgacgacgagctcggctcgggcgtcaaccagcgcgtggtcgtctac
atcgcccagaagcgcaagatcaccgagggtgacaagctcgccggccgtcacggcaacaag
ggcgtcatctcgaagatcctgcccgtcgaggacatgccgttcctcgccgacggaaccccc
gtcgacgtggtcctgaacccgctcggcatcccgggccgcatgaacttcggtcaggtgctc
gagacccacctcggttgggccgcgaagcagggctggaaggtcgacggaagccccgagtgg
gcgaagcgtcttccggagcaggcgcacgaggccgcccccggcacgaaggtcgccactccg
gtgttcgacggtgccctcgaggaggagatcgcgggtctgctcgactcgacgacggtcaac
cgcgacggcgagcgactcatcggatcctccggtaaggcgcagctgttcgacggccgctcg
ggtgagccgttcccggacccggtctcggtcggctacatgtacatcctgaagctgcaccac
ctggtcgacgacaagatccacgcccgctcgaccggtccgtactcgatgatcacccagcag
ccgctcggtggtaaggcgcagttcggtggacagcgtttcggtgagatggaggtgtgggcc
ctcgaggcctacggcgccgcgtacgcgctccaggagctcctgacgatcaagtccgacgac
atcctcggccgcgtgaaggtctacgaggcgatcgtcaagggcgagaacatccaggagccc
ggaatccccgagagcttcaaggtcctcatcaaggagatgcagtcgctctgcctgaacgtc
gaggtcctctcggccgacggcaccgcggtcagcctgcgcgacacggacgacgaggtcttc
cgtgccgccgaagagctcggcatcaacatctcctcgcgcttcgagtcgtcctcgatcgac
gacatctga
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