Herbiconiux sp. L3-i23: L3i23_28500
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Entry
L3i23_28500 CDS
T08550
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
heh
Herbiconiux sp. L3-i23
Pathway
heh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
heh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
L3i23_28500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
heh03400
]
L3i23_28500
Enzymes [BR:
heh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
L3i23_28500
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
L3i23_28500
DNA repair and recombination proteins [BR:
heh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
L3i23_28500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Zn_ribbon_TFIIB
DUF7577
zf-FPG_IleRS
Cys_rich_KTR
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
BDI24074
LinkDB
All DBs
Position
3002765..3003607
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AA seq
280 aa
AA seq
DB search
MQALVTDLDGRLRGRVIDRVDIVSFAVLKTFDPPVSALAGGVVTGVTRHGKFLDIEVGEL
HLITHLARAGWLRWRSAAPAPMTRPGKGPLAARLVLDDGSGFDITEAGTKKSLAMYVTRD
PASVPGIERLGPDPLQPEFTEEVFAGILAAAGRAQIKGVLRNQSNIAGIGNAYSDEILHV
ARMSPFKPASMGADEVHQLYLALQDTLRQAVARADGVAASELKKEKKEGLRVHGRTGQAC
PVCGDTIRQVIYSDSTFQYCPTCQTGGKPLADRVLSRLLK
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggcgctcgtcaccgacctcgacggccgcctccgtggacgcgtcatcgaccgcgtc
gacatcgtgtcgttcgccgtgctgaagaccttcgatccgccggtgtcggctctcgcaggc
ggcgtcgtcaccggggtcacccgccacggcaagttcctcgatatcgaggtcggcgagctg
cacctgatcacgcatctggcgcgtgccggctggctgcggtggcgctccgccgcacccgcc
ccgatgacgcggccgggcaaggggccgctcgccgcgcgcctcgtgctcgatgacggatcc
ggattcgacatcaccgaagcggggacgaagaaatcgctggcgatgtacgtcacccgcgac
ccggcgtcggtgcccggcatcgagcgactcggccccgatccgctccagccggagttcacc
gaggaggtcttcgccggcatcctcgccgccgcggggcgcgcgcagatcaaaggcgtactg
cgcaaccagtcgaacatcgccggaatcggcaacgcctactccgacgagatcctgcacgtc
gcgcggatgtccccgttcaagccggcgtcgatgggcgccgacgaggtgcaccagctctac
ctcgccctgcaggacaccctgcggcaggctgtcgctcgcgccgacggggtcgccgcctcc
gaactgaagaaggagaagaaggagggcctgcgggtacacggccgcaccgggcaggcgtgc
ccggtctgcggtgacaccatccgtcaggtcatctactccgactcgaccttccagtactgc
cccacctgtcagaccggcggcaagccgctcgccgaccgggtgctgtcgcgcctgctcaag
tag
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