Helicobacter pylori Rif2: C730_04695
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Entry
C730_04695 CDS
T02318
Name
(GenBank) rep helicase, single-stranded DNA-dependent ATPase (rep)
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hei
Helicobacter pylori Rif2
Pathway
hei03420
Nucleotide excision repair
hei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C730_04695
03430 Mismatch repair
C730_04695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hei03400
]
C730_04695
Enzymes [BR:
hei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C730_04695
DNA repair and recombination proteins [BR:
hei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C730_04695
MMR (mismatch excision repair)
Other MMR factors
C730_04695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_11
AAA_12
Viral_helicase1
ResIII
AAA_30
DEAD
DGKD_4H
Motif
Other DBs
NCBI-ProteinID:
AFV45310
LinkDB
All DBs
Position
962644..964671
Genome browser
AA seq
675 aa
AA seq
DB search
MLETLQLNPEQLKAAKALQGHNLIIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN
KASNEMIARVAKYFKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKN
AIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSNKNPEHTPYAALYENILEEFENTKK
KHNYIDYNDLLLLFKKAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQ
SIYAFNGADISIISNFTQKYKNAQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVV
KSGKFNKPTLLNYNDNIAQCQDIAKRIVMRKDFKEVAVIFRNNASADQLEAALRSYNVPS
KRKGSASFFESKEVALALDICVLIFNPKDIMAAIHILSYISDIGSNTAKDIHEALMLLGN
GDLKLALIQPNKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKI
SLNGAKTLSDFFTLYTKAPTHSPSALIKHILESAFFQTFKTRLLKERSKNKDGSYNEFKK
LQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSNEATQGCGVNLLSVHASKGLEFKDV
YIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKP
SVFLYEAGLLKPDSK
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
ttgttagaaactttgcaattaaaccctgagcagctaaaagcggccaaggctttgcaaggg
cataatttaatcattgcgagcgctggcacaggaaagacttctacgattgtggggcgtatt
ttatacctgcttgataacggcatcaagcctgaagaaatcttgcttttgactttcaccaat
aaagcgagtaatgaaatgattgccagggtggctaaatattttaaatcaagctccaaaatt
gaagcgggcactttccatgcggtagcgtatcgctacttaaaagagcattaccctaattta
agcctaaagcaacctaaagaattgagaaaacttttagaaagcattgtggacactaaaaac
gccatagatgacgataaaaagccctacacttcgcagcacctctacgccctctattctctt
tataccaacgctctaaaacaagaagattttagcgcatggctttcaaataaaaaccctgaa
cacacgccatacgccgccctttatgaaaacattttagaagagtttgaaaacactaaaaaa
aagcataattatattgactataacgacttgctgctgctgtttaaaaaagcgatgctagaa
agacctagcccttataaagaagtgctttgcgatgagtttcaagacactaaccccttacaa
gaatccattttagacgctatcaaccctcccagtttgttttgcgtgggcgattacgatcag
agcatttacgcttttaatggggcggatatttctatcatttctaatttcactcaaaaatac
aaaaacgcccaggttttcacgctcaccaaaaactaccgctcttctaaagaaattttagat
ctcgctaatcaagtgatacagcataacgagcgcatttaccctaaaaatttagaagtggtg
aaatcagggaaattcaataaacccacgcttttaaattacaacgacaatatcgcgcaatgc
caagacatcgccaaacgcattgtcatgcgaaaggattttaaagaagtggcagtgattttt
aggaataacgcgagcgcggatcaattagaagccgctttaagatcttacaatgtgccaagc
aaaaggaaagggagcgcgagcttttttgaatccaaagaagtggcgttagcgttagatatt
tgcgtgctcatctttaaccctaaagacattatggcagcgattcacattttaagctatatc
agcgatattggctctaacaccgctaaagacattcatgaagctttgatgcttttaggcaat
ggcgatctcaaactagctttaattcagcctaataaagaagccaaaatttacacgaagaaa
aaagaaatcacctctatggggctttttgaagaaatttttgccctagaaaacagctcaagg
tttaatagcgtgatagataaagcgtttcattcgcacccggtgttgatgcaccctaaaatc
tcactcaatggggctaaaacgctcagcgattttttcactctttacactaaagcccctacc
cattcccctagcgctttaatcaagcacattctagaaagcgcgttttttcaaacctttaaa
acacgccttttaaaagagcgatccaaaaataaggacggatcttataacgagtttaaaaaa
ctccaagcgcaaaaacgcttcaatgaaaaaatggacttgctgagctctttggcgaaaaat
taccaaaatttagggcgttttttaaacggcactttaataggctctaatgaagccacacaa
ggctgtggcgtgaatctattgagcgtgcatgcttctaaaggcttagagtttaaagatgta
tatattatagatttaatggagggccgtttccctaaccacaagctcatgaataccggtggg
ggcattgaagaagagcggcggcttttttatgtcgctatcacaagggctaaggaaaattta
tggctttcttatgcgaaaaacgaattgagggaaaacgccaaacctaaagagcataagcct
tcggtgtttttgtatgaagcggggcttttgaaacccgattcaaaataa
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