Helicobacter pylori Rif2: C730_05745
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Entry
C730_05745 CDS
T02318
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hei
Helicobacter pylori Rif2
Pathway
hei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C730_05745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hei03400
]
C730_05745
DNA repair and recombination proteins [BR:
hei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C730_05745
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C730_05745
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
Microtub_bd
Kinesin
AAA_7
DUF87
HAM1_N
YqbF_HeH
AAA_22
Enkurin
Motif
Other DBs
NCBI-ProteinID:
AFV45512
LinkDB
All DBs
Position
complement(1175654..1177630)
Genome browser
AA seq
658 aa
AA seq
DB search
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL
IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER
LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY
SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG
VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK
SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL
LDPKFEVRDSDKQVQDLFDEIKLVVARGERVLITTLTKKMAEELCKYYAEWGLKARYMHS
EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT
MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELK
LRDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECTKNLDFEEAMRLRDEIAQLRTL
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgcccttatttgatttaaaaagcccttatccaccagcaggcgatcagccccaagccata
gaagccttgacgaaaagcttgaaaaataacaaccattatcaaactttagtgggggttaca
ggaagcggtaagacttatacgatggccaatatcatcgctcaaaccaataaacccgctttg
atcatgagccataataagaccttatgcgcacagctttatagcgagtttaaggcgtttttc
ccgcataatagggtggagtattttatctcccactttgattactaccagcctgaaagctat
atccctaggagggatttattcattgaaaaagacagctctattaatgatgatttagagcgt
ttgagattgagcgcgaccacctcacttttaggttatgatgatgtgatcgtgatagcgagc
gtttcggctaattatggtttgggtaaccctgaagaatatttaaaagtcatggaaaaaatc
aaagtgggcgagaagcgcgcttacaagagttttttattaaagctagtggaaatgggctat
agccgtaatgaagtggtgtttgatagggggagctttagagcgaccggagaatgcgtggat
attttccccgcttataatgacgctgaatttattaggattgaattttttggcgatgagata
gaaaggattgcggtctttgacgctttagaaaaaaatgaaatcaagcgcttggattctgtc
atgctttatgcggccagtcagtttgccgtagggagcgagaggctgaatttagccattaaa
agcattgaagatgaactcgctttaaggttgaaattttttaaagagcaggataaaatgctt
gaatacaaccgcctcaaacaacgcaccgagcatgatttagaaatgattagcgcgaccggt
gtgtgtaagggcattgaaaattacgcgcgccatttcaccggtaaagcccctaacgaaacg
cctttttgcttgtttgattatttagggatttttgagcgggagtttttagtcattgtggat
gaaagccatgtgagtttgccacagtttggggggatgtatgcaggggatatgagcaggaaa
agtgttttagtggaatatggttttagattgcctagcgctttagacaaccgccctttaaaa
tttgatgaatttatccataaaaattgccagttcctttttgtgtccgctacgcccaataag
ctagaattagagctttccaaaaagaatgtcgctgagcaaatcattcgccctacagggctt
ttagaccctaaatttgaagtgcgagacagcgataagcaagtccaggatttgtttgatgaa
atcaagttagtggtggctagaggtgaaagggtgctcatcaccacgctcactaaaaaaatg
gcagaagaattgtgcaaatattatgctgaatggggcttgaaggcgcgttacatgcatagt
gaaattgatgcgattgaaaggaatcacatcatccgctctttaaggcttaaagaatttgac
attttaatagggatcaatcttttaagagaagggctggatttgcctgaagtctctttagta
gcgatcatggatgcggataaagaagggtttttaaggagtgaaacaagcctcattcaaacc
atggggcgagccgctagaaacgctaatggcaaggttttattatacgctaaaaagatcact
caaagcatgcaaaaagcctttgagatcactagttacaggcgcgccaaacaagaagagttc
aataaaatccataacatcacccccaaaaccgttacgcgcgctttagaagaggaattgaaa
ttaagagacgatgaaattagaatcgctaaagccttaaaaaaggacaaaatgcctaaaagt
gaaagggaaaaaatcattaaagaattggataaaaaaatgcgagaatgcacgaagaatttg
gattttgaagaagcgatgcgtttgagagacgaaatcgctcaattaagaacgctttaa
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integrated database retrieval system
