Helicobacter pylori Rif2: C730_07990
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Entry
C730_07990 CDS
T02318
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hei
Helicobacter pylori Rif2
Pathway
hei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C730_07990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hei03400
]
C730_07990
Enzymes [BR:
hei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C730_07990
DNA repair and recombination proteins [BR:
hei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C730_07990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AFV45951
LinkDB
All DBs
Position
complement(1618631..1621630)
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYRALNKGFDYQILACKDFKESELAKEVISYFKPNTKAILFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQETIIIAPISALLHPLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDTECESIKEFDPITQMSL
KEDLLEIEIPPTLFSLDESSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKAQDLLIVYK
SIISPRALEEIQELASLNELDCERFKFLKVLENAQGYEDLEIHAHALEGFIALHSNHKIT
LLAPNKTILDNAISALDAGNMECVIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGEDKLLLPVENLHLIARYVAQS
DSVPAKDRLGKGSFLKLKAKVRTKLLEIASKIIELAAERNLILGKKMDVHLAELEVFKSH
AGFEYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVELGQVDALIGTHAILGAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTPP
TDRKPSRTFLKEKNDELLKEIIYRELRRNGQIFYIHNHIASILKVKTKLEDLIPKLKIAI
LHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESVAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLGVSAFLNPELIASDSLRLD
LYRRLSLCENTDEVGQIHEEIEDRFGKIDDLSAQFLQIITLKILANQLGIIKLSNFNQNI
TITYSDEKKESLKAPSKDDNDILETLLKHLRAQISLKRR
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatccagcctttatagagccttaaacaaaggctttgattaccaaatactcgct
tgtaaggattttaaagaatccgagctcgctaaagaagtcataagctattttaagccaaat
accaaagccattcttttcccggagtttagggctaaaaaaaacgacgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttaagggagttttatcaagccttagaaaac
aagcaagaaactatcatcattgccccgattagcgcgttattgcaccctttacctaaaaaa
gaacttttagaaagctttaaaatcactcttttagaaaaatataaccttaaggatttgaaa
gacaagctcttttattatggctatgaaattttagacttagtggaagtggaaggcgaagcg
agctttaggggggatattgtggatatttatgcgccaaattctaaagcgtatcgcttgagt
ttttttgacaccgagtgtgagagcattaaggaatttgatcccattactcaaatgagcctt
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttggacgaatcatct
tataaggatctaaaaacaaaagtggaacaaagccccttaaatagcttttctaaagattta
accagttttggtttgtggtttttaggagaaaaagcacaagacttactaatcgtttataaa
agcattataagtcctagagctttagaagaaattcaagaattagcgagcttaaacgaattg
gattgtgagcgtttcaaatttttaaaggttttagaaaacgcgcaaggctatgaagattta
gaaatccatgcgcatgccctagaaggctttatcgctttgcattcaaatcataaaatcacg
ctcctagcccccaataaaacgattttagacaacgcgataagcgcgcttgatgcaggcaac
atggaatgcgtcatcgccccctttgtgttaaactttaaaacccctgatgggatttttatt
tcgctcaattcttttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaatgag
ttgaatccgggcgaatgggtggtgcatgatgattatggggtgggcgtgttttctcaatta
gtccagcacagcgttttagggagcaagagggattttttagaaatcgcttatttgggcgaa
gacaaactgctgttaccggtagaaaacttgcatctcatcgctcgctatgtggcgcaaagc
gatagcgtgccagctaaagaccggctagggaaagggagctttcttaaattaaaagctaaa
gtcaggactaagcttttagagattgctagcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggatgtgcatttagcggagttggaagtctttaaatcgcat
gcggggtttgaatacaccagcgatcaagaaaaggctatcgctgaaatttcaaaggattta
agctctcacagggtgatggatagattattgagtggggatgtgggttttgggaaaacagaa
gtggcgatgcatgcgattttttgcgcgtttttgaacggctttcaaagcgctttagttgtg
cctaccactttattagcgcaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgcgagcgaaaaaaacaagcttttaaaggcg
gtggaattagggcaagttgatgcgctaataggcacgcatgcgattttaggcgcgaaattc
aaaaacctgggcttggtggtggtggatgaagagcataaatttggcgtgaaacaaaaagaa
gctttaaaagaattgagtaagagcgtgcattttttaagcatgtccgctacgcctatcccg
cgcactctaaacatggcgctctctcaaattaagggcattagttctttaaaaaccccgccc
acagacagaaagcccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
attatttacagagaattacgccgtaacgggcaaattttttacatccataaccacatcgct
agcattttaaaagtcaaaaccaagctagaagatttaatccctaaactcaaaatcgctatt
ttgcattcccagattaacgctaatgagagcgaagaaatcatgctagagtttgccaaggga
aattatcaggttttattatgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgatcattatagataatgcgcaaaatttcgggctggctgatttgcaccaattgaga
gggcgtgtggggagaggtaaaaaagaaggcttttgttatttcctcatagaagatcaaaaa
agtttgaatgaacaggctttaaaacgcttgctcgctttggaaaaaaattcatatttaggc
agcggggagagtgtcgcttatcatgatttagaaatcagggggggcgggaatttgctcggg
caagatcagagcgggcatattaaaaacattggttatgcactctatacgcgcatgcttgaa
gacgcgatttatgaattgagtggggggaagaaaaggcttgaaaagagcgtagaaatccaa
cttggcgtgagcgcttttttaaaccctgaactcattgcaagcgatagtttgagattggat
ttataccgccgtttgagtttgtgtgaaaatacagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggcaaaatagacgatttgagcgctcaatttttgcaaatcattacg
cttaaaattctagccaaccagcttggcatcatcaaactttctaatttcaatcaaaacatc
accatcacttatagcgatgaaaagaaagaaagcctgaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcgcgctcaaatttctttaaagcggcgttaa
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