Halomonas elongata: HELO_2913
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Entry
HELO_2913 CDS
T01311
Symbol
vasH
Name
(GenBank) GAF/sigma-54-interact/HTH domain transcription regulator VasH
KO
K11908
sigma-54 dependent transcriptional regulator
Organism
hel
Halomonas elongata
Brite
KEGG Orthology (KO) [BR:
hel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hel03000
]
HELO_2913 (vasH)
Transcription factors [BR:
hel03000
]
Prokaryotic type
Helix-turn-helix
Other families
HELO_2913 (vasH)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_5
HTH_8
AAA_16
AAA
AAA_2
DnaG_DnaB_bind
HTH_50
TsaE
Motif
Other DBs
NCBI-ProteinID:
CBV42797
UniProt:
E1V3W8
LinkDB
All DBs
Position
complement(2236312..2237937)
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AA seq
541 aa
AA seq
DB search
MRGDGVRDETKTLAPVPALAGMAEALRLVEGGSPAELRRRSVSLLRERLALPWVRCLALD
ASGRWLEEEGEAPSLACDDFRHPYAHAIRNGRPLALGLGEARTRLDHEAFQAATAGLPAA
WRLVVRPLRACDGKREWLGVLAVAGPAERVEALIECDDYLAFEALLCRLWAWLVRQHDER
RDQARLRDSLAELNDGARRRTLSERLGRRILGESPAIRTLRDQLVRAAETNLAVLLQGET
GTGKELVARGIHEVSARHEGPFLAVNCAAIPESLLEAELFGHVRGAFSGAERDREGLFGE
ADGGTLFLDEIGDMPLALQAKLLRVLETGRYRPLGGDRERRVDLRLVAATHQPLHRRIRE
GSFRADLYYRLGQFPLTLPALRERREDIPVLAQAFIDDFCRREGREDIGLGRAVLRALDD
RDFPGNVRELRNLIDYACAMTRDGESLAPEALPVASALPGAEDAAGESPQGGEASLDPGT
GGEPGGGEVFDLRRALRDYEATLIRQRLARFDGNRTLAAESLGLPKRTLAHKCRQLQLDS
P
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
gtgagaggcgacggcgtgcgcgacgagacgaagacgctcgcaccggtcccggcgctggct
ggcatggccgaggcgctgcggctggtcgagggcggctcgcctgccgagctgcggcggcgc
agcgtttcgctgttgcgcgagcgcctggcgctgccctgggtacgttgtctcgccctggac
gctagcggtcgttggctggaagaggagggcgaggcgccgagcctggcctgcgacgacttc
cgccatccctatgctcatgccatccgcaatggccggccgcttgccctggggctcggcgag
gcccgtacgcggctggaccacgaggcctttcaggcagcgacggccgggctgcccgcggcc
tggcggctggtggttcgcccactgcgcgcctgcgacggcaagcgcgaatggctcggcgtg
ctggccgtcgcagggcccgccgagcgcgtcgaggcgctgatcgagtgcgacgactatctg
gccttcgaagcgctgctgtgtcgtctctgggcctggctggtccgccagcatgacgaacgc
cgtgaccaggccaggctgcgtgactcgctggccgaactcaatgacggcgcacgccggcgc
accctcagcgaacgtctcgggcgacgcattctcggtgagtcgccggccatccgcacgttg
cgcgatcagttggtgcgtgccgccgagaccaacctggcggtgttgctgcaaggcgaaacc
ggtaccggcaaggaactggtggcgcgtggtatccacgaggtctcggcgcgccacgaaggc
cctttcctggcggtcaactgcgcggcgatccccgagagtctgctcgaggccgagctgttc
ggccatgtacggggagctttctccggcgccgagcgtgaccgcgaggggctgttcggcgag
gccgatggcggcaccctgttcctcgacgagatcggcgacatgccgctggcactacaggcc
aagctgttgcgtgtgctggagacgggacgttatcgaccgctgggcggtgaccgcgagcga
cgggtcgacctgcgcctggtggcagcgacccatcaaccgctgcatcgtcgcattcgcgaa
ggcagcttccgtgccgacctctactaccggctcggccagttcccgctcacgctgcccgcg
ctgcgtgagcgacgcgaggatatccccgtgctggcccaggccttcatcgacgatttctgt
cggcgcgagggtcgcgaggacatcggcctcggtcgtgccgtgctgcgtgcgctcgacgac
cgcgacttccccggcaatgtgcgtgagctcagaaacctcatcgactatgcctgcgccatg
acccgtgatggcgaaagcctcgcccccgaggcactgcccgttgccagtgccttgccgggt
gccgaggacgcggcgggcgagtcgccccagggcggagaggccagcctcgatcccggtact
ggaggcgagcctggtggtggagaggtcttcgatctgcgccgagcgctgcgcgactacgag
gcgacgttgatccgccagcggctggcccgtttcgacggtaaccgcaccctggctgccgag
agtctgggcctgcccaagcgcactctggcccacaagtgtcgacagctccaattggatagc
ccatga
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