Halomonas elongata: HELO_3104
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Entry
HELO_3104 CDS
T01311
Symbol
rnb
Name
(GenBank) exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hel
Halomonas elongata
Brite
KEGG Orthology (KO) [BR:
hel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hel03016
]
HELO_3104 (rnb)
Enzymes [BR:
hel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HELO_3104 (rnb)
Transfer RNA biogenesis [BR:
hel03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HELO_3104 (rnb)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
RNase_II_C_S1
ODP
Motif
Other DBs
NCBI-ProteinID:
CBV42988
UniProt:
E1V4Q0
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All DBs
Position
2473174..2475114
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AA seq
646 aa
AA seq
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MLQNNSALAQLKQQIRDNTPRVEGVIKATERGFGFLETEDGTSYFVPPPAMKQVLHGDRV
GAILHEEGEKKSVEPDTLIEQGLERFIARVRKRDGRLAVIPDHPSISNALKARVKRSLDE
ASLDDGDWVEARLVRHPLKPDDRAFFAQIDELVAKHDNPAVPWRVTLARHALEQASPDGG
DDWPLRDEGLQREDLTEAPFFTIDDAKTRDMDDALRIEPRDNGGWRLTVAIADPTAYVAE
GDGVDLEARTRAFTVYLPGQNVTMLPEHLADDLCSLWEGQDRPALACALDVEADGSLGDY
RFFAATVRSHARLAYDDVSDWLEGQGEWAPEPAIGEQLKALRDLTEARTAWRAEHALVFK
DRPDYVFDLDDAGNVLNIRTEQRRIANRMIEESMIAANACCAHLLAEHVGHGIFNVHRAF
EPEKAEAAREFLADQDIEVALEALTELPRYKELKRELEGRDDAWLDARLRRFQGFTSMSA
RPGPHFGLGLAAYATWTSPIRKYGDMVNHRLIKRVLKGEQAPAEASLELTEQLTERRRLN
RMAERDVKDWLYVRYLGPHAESGEAFNAEIIAINRGGMRVRLTANGATAFVPAPLMHSDR
DKVVIDDKEGRIQIEGEERFKLGDHVRVALTEAREETRSLVGRPAD
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgctgcagaacaactcggcgcttgctcagctcaagcaacagattcgcgacaacacgcct
cgagtcgaaggcgtgatcaaggccaccgaacgaggcttcggttttctcgaaaccgaggac
ggcacctcttacttcgtgccgccccccgccatgaagcaggtactgcatggcgaccgtgtc
ggagccatcctccacgaggaaggcgagaagaagtcggtggagccggacaccctgatcgaa
cagggcctggagcgcttcattgcccgggtgcgcaagcgcgatggtcgactggcggtgatc
cccgaccacccttcgatcagcaacgccctcaaggcgcgcgtcaagcgcagcctcgacgag
gcatcgctcgacgatggcgactgggtcgaggcccgtctcgtgcgtcacccgctcaagccg
gatgaccgcgccttcttcgcccagatcgacgagctggtcgccaagcacgacaacccggcc
gtgccctggcgcgtgaccctggctcgccatgccctggaacaggccagccccgacggcggc
gatgactggccgttgcgcgacgagggtctgcagcgcgaggacctcaccgaggcgcccttc
ttcaccatcgacgacgccaagacccgcgacatggacgatgccctgcgcatcgagccccgg
gacaacggcggctggcgactgaccgtggccatcgccgatcccaccgcctatgtcgccgaa
ggcgatggcgtcgatctggaagcgcgcactcgcgccttcaccgtctatttgcccgggcag
aacgtcaccatgctgccggagcacctggccgacgatctctgctctctgtgggaaggccag
gaccgccccgccctggcctgcgccctggatgtggaagccgacggctcccttggcgactac
cgcttcttcgccgccacggtgcgttcccatgcgcggctggcctacgacgatgtctccgac
tggctggaaggccagggcgagtgggctcccgagccggccatcggcgagcagctcaaggca
ttgcgcgacctgaccgaggcccgcaccgcctggcgcgccgagcatgccctggtcttcaag
gaccggccggattacgtcttcgacctggacgatgccggcaacgtgctgaacatccgcacc
gagcagcggcgcatcgccaatcgcatgatcgaggaatcgatgatcgcggccaatgcctgc
tgcgcccacctgctggccgagcacgtgggccacggcatcttcaacgtccatcgcgccttc
gagccggaaaaggccgaagccgcccgcgaattccttgccgatcaggacatcgaggtggcg
ctggaagcgctcaccgagctgccacgctacaaggaactcaagcgcgagctggaaggccgc
gacgacgcctggctcgacgcccgcctgcgtcgcttccagggcttcaccagcatgtcggcc
cgcccggggccgcacttcggtctcggccttgccgcctacgccacctggacctcgccgatc
cgcaagtacggcgacatggtcaaccaccgcttgatcaagcgcgtgctcaagggcgaacag
gccccggcggaagccagcctcgagctcaccgagcagttgaccgagcgccgccgcctgaac
cgcatggccgagcgcgacgtcaaggactggctctatgtgcgctacctcggcccccatgcc
gaatccggcgaggccttcaacgccgagatcatcgccatcaaccgtggcggcatgcgggtg
cgcctgaccgccaacggcgccaccgccttcgtaccggccccgctgatgcacagcgaccgc
gacaaggtggtgatcgacgacaaggaaggccgtatccagatcgagggtgaggaacgcttc
aagctcggcgaccatgtccgggtcgcgctgaccgaagcccgcgaggaaacgcgttcgctg
gtgggtcgccccgccgactga
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