Halomonas elongata: HELO_3192
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Entry
HELO_3192 CDS
T01311
Symbol
rhlD
Name
(GenBank) ATP-dependent RNA helicase RhlD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hel
Halomonas elongata
Pathway
hel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HELO_3192 (rhlD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hel03019
]
HELO_3192 (rhlD)
03009 Ribosome biogenesis [BR:
hel03009
]
HELO_3192 (rhlD)
Enzymes [BR:
hel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HELO_3192 (rhlD)
Messenger RNA biogenesis [BR:
hel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HELO_3192 (rhlD)
Ribosome biogenesis [BR:
hel03009
]
Prokaryotic type
rRNA helicases
HELO_3192 (rhlD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
HEM4
Motif
Other DBs
NCBI-ProteinID:
CBV43076
UniProt:
E1V5C1
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All DBs
Position
complement(2574167..2575834)
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AA seq
555 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLSAVETLGYETPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPILSRLELDRREPQVLVLAPTRELAQQVAASFSKYGQNLKGLEVAILCGGMEYRD
QMQALRRGAQVVVGTPGRIIDHLDRGSLKLGGLSALVLDEADEMLRMGFIDDVKRVVADT
PVDAQRVFFSATLPTEIERIVNQYLVEPVKVTIESRASSGDNIEQRRVRIDGGAKLEALA
RILEVEPVDAAIVFVRTRAACTTLMEQLSARGLNVASLSGDLDQSLRERTITRLKRGKID
VLIATDVAARGLDVPRITHVINYDLPQDAEAYTHRIGRTGRAGRAGVAITFAGNREGRKV
GWLERATGRKMDDMELPDEAAIRAHRDEIFQQRVIGSLTKDADSQRDLVERLVEEGYDPI
ELACAFAALARADEAPIGRLQAPRKERAPRESKPRRERGPSEGMTRYRVAVGHKDGIKPG
QLVGALANEGGIEGNRIGRIDIRNAFSVVELPSGLPSSILTKMARARVGGRPLEISEDRA
PRRQRDDDSDRRARA
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttccgtcgcctcgccgagtttcggcgatctggccctgctgcccgccgtt
ctctccgctgttgagacactcggttacgaaacgccgtcaccgatccaggcacagaccatt
ccggcactgctggaaggccgcgacatgctgggccaggcccagaccggtaccggcaagacc
gctgcctttgccctgccgattctctcgcgtctcgaactcgatcgtcgcgagccccaggtg
ctggtactggcgccgacccgtgagctggcgcagcaggtagccgcgtccttctccaaatac
ggccagaacctcaagggcctggaagtggcgatcctgtgtggcggtatggaataccgtgac
cagatgcaggccctgcgccgtggcgcccaggtcgtggtcggtacgcccggtcggatcatc
gaccacctggatcgcggcagcctcaagctcggcgggctctcggccctggtgctggacgag
gccgacgagatgctgcgcatgggcttcatcgacgacgtcaagcgcgtggtcgccgatacc
ccggtggacgctcagcgcgtcttcttctccgcgaccctgcccaccgagatcgagcgcatc
gtcaaccagtacctggtggagccggtcaaggtgaccatcgagtcgcgcgcttccagcggc
gacaacatcgaacagcgccgggtgcgcatcgatggcggtgccaagctcgaagccctggca
cgtatcctcgaagtggagcccgtcgatgccgcgatcgtcttcgtgcgcacccgggcggcc
tgcaccaccctgatggagcagctctcggcgcgtggcctgaatgtggcgagcctgtccggc
gacctggatcagagcctgcgcgaacgcaccatcacgcgtctcaagcgcggcaagatcgat
gtgctgatcgccaccgacgtggccgcgcgtggcctggacgtgccgcgtatcacccacgtc
atcaactatgacctgccccaggacgccgaggcctatacccaccgtatcggccggaccggt
cgtgccggtcgtgccggggtggccatcaccttcgccggcaaccgcgaagggcgcaaggtc
ggctggctcgagcgtgccaccggccgcaagatggacgacatggaactgcccgacgaggct
gccatccgcgcccatcgcgacgagatcttccagcagcgcgtgatcggctcgctgaccaag
gacgccgattcccagcgtgacctggtcgagcgcctggtcgaggaaggttacgatccgatc
gagctggcctgtgccttcgctgccctggcgcgtgccgacgaagcgcccatcggtcgcctg
caggcgccgcgcaaggagcgtgccccccgcgaaagcaagccgcgccgcgagcgtggaccc
agcgagggcatgacgcgctaccgcgtcgccgtgggccacaaggatggcatcaagccgggc
caactggtcggtgccctggccaacgaaggcggtatcgagggcaaccggattggccggatc
gacatccgcaatgcgttttccgtcgtcgagttgccgagtggtctgccatccagcattctg
accaagatggcacgcgcccgggttggcggtcgtccgctggagatcagcgaggatcgcgca
ccgcgtcgccagcgcgatgacgattcggaccgtcgcgcacgggcctga
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