Halomonas elongata: HELO_3823
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Entry
HELO_3823 CDS
T01311
Symbol
mutM
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
hel
Halomonas elongata
Pathway
hel03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HELO_3823 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hel03400
]
HELO_3823 (mutM)
Enzymes [BR:
hel01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HELO_3823 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HELO_3823 (mutM)
DNA repair and recombination proteins [BR:
hel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HELO_3823 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
PSMbeta
DUF5830
NFACT_N
Glyco_hydro_15
Motif
Other DBs
NCBI-ProteinID:
CBV43707
UniProt:
E1V935
LinkDB
All DBs
Position
complement(3316993..3317817)
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AA seq
274 aa
AA seq
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MPELPEVETTRRGIAPHVEAREIREVIVRQSRLRHPVPEDLADRLVGAHLGRLDRRAKYL
LMPVVGERGGTLLCHLGMSGSLRIARLGELPKKHDHVDLVLDDGAILRYHDPRRFGFIDW
LDGDVARDRRLAKLGPEPLSEAFDGERLYAMSRKRRLAVKPFLMDNAVVVGVGNIYAAEA
LFLAGIDPRREAGRISRERYTRLAEAIREVLAAAITQGGTTLRDFVSGTGEPGYFAQRLN
VYGRDGEPCRRCGAELRLVTLGQRASVFCAACQR
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagcttcccgaggtcgaaaccacccgacgcggcatcgccccgcatgtcgaggcg
cgcgagatccgcgaggtgatcgtgcgccagtcgcgcctgcgccacccggtgcccgaggat
ctcgccgaccgtctggtgggcgcgcatctgggccggctggatcgtcgcgccaagtacctg
ctgatgccggtggtcggcgagcggggcggaaccctgctgtgccacctgggcatgtccggc
agcctgcgcatcgcacggctgggcgagctgcccaagaagcacgatcatgtcgacctggtg
ctcgacgacggggctatcctgcgctatcacgatccgcgtcgcttcggcttcatcgattgg
ctggatggcgatgtcgcgcgggaccgtcggctggcgaaactggggccggagccgctctcg
gaggccttcgatggcgagcggctctatgcgatgtcccgcaagcgacggctggcggtcaag
cctttcctgatggacaacgccgtggtggtcggtgtcggcaacatctacgccgccgaggcc
ctgttcctggccggcatcgatccgcgccgcgaggcggggcgcatctcgcgcgagcgctat
acgcgcctggccgaggccatccgcgaggtgctggccgcggccatcacccagggaggcacg
acgctgcgcgacttcgtcagtggcaccggcgagccggggtatttcgcccagcggctcaat
gtctatggccgcgatggcgaaccctgccggcgctgcggtgccgagctgcgcctggtgacc
ctggggcagcgtgccagtgtcttctgtgccgcctgccagcgctga
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