Halomonas elongata: HELO_4002
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Entry
HELO_4002 CDS
T01311
Symbol
polA
Name
(GenBank) DNA polymerase 1
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
hel
Halomonas elongata
Pathway
hel03030
DNA replication
hel03410
Base excision repair
hel03420
Nucleotide excision repair
hel03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HELO_4002 (polA)
03410 Base excision repair
HELO_4002 (polA)
03420 Nucleotide excision repair
HELO_4002 (polA)
03440 Homologous recombination
HELO_4002 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hel03032
]
HELO_4002 (polA)
03400 DNA repair and recombination proteins [BR:
hel03400
]
HELO_4002 (polA)
Enzymes [BR:
hel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HELO_4002 (polA)
DNA replication proteins [BR:
hel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HELO_4002 (polA)
DNA repair and recombination proteins [BR:
hel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HELO_4002 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HELO_4002 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
CBV43886
UniProt:
E1V9Z8
LinkDB
All DBs
Position
complement(3526405..3529173)
Genome browser
AA seq
922 aa
AA seq
DB search
MADTPIVLVDGSSYLYRAFHALPPLTTSEGQPTGAVKGVLNMLKRLLKDYPDSPMAVVFD
APGKTFRDDLYAEYKAQRPPMPDDLRVQVEPLHDCVRALGLPLLCVEGVEADDVIGTLAR
QAAEAGRDAVISTGDKDMAQLVNGHITLVNTMKDETLDTAGVEAKFGLPPSLIIDFLALM
GDKVDNIPGVPGVGEKTALGLLQGMEGGLETVYADLEKVKTLSFRGAKTLPKKLEENREQ
AFLSYELATIKTDCELPVGLDDLNIARPDREALLALYRRLEFKNWLSELLEGGDEGVDDV
AGGTATPEASDTADAGNGSGARHDVVITEQAVLDEWLARLADCEAFCFDLETTSLSYMEA
DIVGVGLALEPGEAAYIPLAHDYLDAPEQLDRQAVLEALAPLWADAGKAKIGQNLKYDIS
VLARHGHEVAGPLHDTMLESYVLDSTATRHDMDSLALKYLGEKTVSFEDIAGKGAKQLTF
NQIALEQAAPYACEDVDITLRLHRELRPRVEGQGRLAEVLDNLERPLVRVLSRMERNGVA
LDPERLHEQSRELGERIRELEQRAHELAGREFNLGSPKQLGEILFEEQKIPVIKKTPKGA
PSTAEAVLEELALDYPLPKVIMEHRGFSKLRSTYTDKLPKLVDPTTGRLHTSYHQAVTAT
GRLSSSDPNLQNIPIRTEQGRRIRQAFVARPGYRLVAADYSQIELRIMAHLSGDKGLLDA
FAQGRDIHAATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQI
YIDRYFDRYPGVARYMERIRAQAAEDGYVETVFGRRLHLPEIHSQNRNRRQGAERTAINA
PMQGTAADIIKRAMIDVDGWLADGDIDAMMVMQVHDELVFEVAESEVDAFMDQVKTRMEN
AAELDVALTVEAESGANWDEAH
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggccgacacccccatcgtactcgtcgacggttcctcctatctgtaccgagccttccac
gccctgccgccgctgaccacctccgagggccagcccaccggcgcggtcaagggcgtgctc
aacatgctcaagcgattgctcaaggattaccccgacagccccatggcggtggtcttcgat
gcgcccggcaagaccttccgcgatgacctctacgccgaatacaaggcgcagcggccaccg
atgccggacgacctgcgcgttcaggtcgagccgctgcacgactgcgtgcgcgcccttggc
ctgccgttgctgtgcgtcgagggtgtggaggccgacgacgtcatcggcaccctggcccgc
caggccgctgaagccgggcgcgacgccgtgatctcgaccggcgacaaggacatggcgcag
ctggtcaacggccatatcaccctggtcaacaccatgaaggacgaaaccctcgacacggcc
ggtgtcgaggcgaaattcggactgccgcccagcctgatcatcgactttctcgccctgatg
ggcgacaaggtcgacaacattcctggtgtgcccggcgtcggcgagaagaccgccctgggg
ctgctgcagggcatggaaggcggcctggaaaccgtctacgccgatctggagaaggtcaag
acgctgagcttccgcggtgccaagaccttgccgaagaagctcgaggagaatcgcgagcag
gcctttctctcctatgagctcgccaccatcaagaccgactgcgagctgccggtcgggctc
gacgacctgaatatcgcccggcccgatcgcgaagcgttgctcgccctctaccgccgcctg
gagttcaagaactggctgtcggagctgctggaaggcggagacgagggtgtcgacgacgtg
gcgggcggcaccgccacgcccgaagcgagcgacacggcggatgccggtaacggcagcggg
gcgcgtcacgacgtggtgatcaccgagcaggcggtactggacgagtggctggcgcgcctc
gccgactgcgaggcgttctgcttcgatctggagaccaccagcctctcctacatggaggcc
gatatcgtcggcgtggggctcgccctggaaccgggggaagcggcctacattccgctggcc
cacgattacctggatgcccccgaacagctcgaccgccaggccgtgctcgaagcactggca
ccgctgtgggccgatgccggcaaggccaagatcggccagaacctgaaatacgacatctcg
gtgctggcgcgtcatggccatgaggtggccggtccgctgcacgacaccatgctcgaatcc
tatgtgctggattccacggccacccgccacgacatggactccctggccttgaagtacctg
ggcgagaagacggttagcttcgaggacatcgccggcaagggcgccaagcagctcaccttc
aaccagatcgctctggagcaggccgcgccctacgcctgcgaggacgtcgacatcaccctg
cgcctgcaccgcgaactgcgaccgcgggtcgaggggcagggccggctggccgaagtgctc
gacaatctcgagcgcccgctggtgcgggtcctgtcgcggatggagcgcaatggcgtggcg
ctggatccggaacgcctccacgagcagagccgggaactgggcgagcgcatccgcgaactc
gagcagcgcgcccatgagctggccggacgcgaattcaacctcggctcgcccaagcagctg
ggcgagatcctgttcgaagagcagaagattccggtcatcaagaagacacccaagggggcg
ccctcgaccgccgaggccgtgctcgaggagctggcgctggattatccgctgcccaaggtg
atcatggagcatcgcggtttctccaagctgcgctccacttacaccgacaagctgcccaag
ctggtcgacccgacgaccgggcgcctgcataccagctatcaccaggcggtcaccgccacc
gggcgtctgtcgtcatccgatcccaacctgcagaacatccccatccgcaccgaacagggg
cggcgcattcgtcaggccttcgtggcccggccgggctaccggctcgtcgccgccgactat
tcgcagatcgagctgcgcatcatggcgcacctgtcgggcgacaagggcttgctcgacgcc
ttcgcccagggccgcgacatccacgccgccactgccgccgaggtcttcggcgtggcgctg
gacaaggtctccggcgaacagcggcgcagcgccaaggcgatcaacttcgggctgatctat
ggcatgagcgcctgggggctggggcgtcagctccacatcgagcgcaaccaggcccagatc
tatatcgaccgttacttcgaccgctatcccggcgtggcccgctacatggagcgcatccgt
gcccaggcggcagaggacggctacgtcgagaccgtcttcggccgacggctgcatttgccg
gagatccactcccagaaccgcaaccgtcgccagggcgccgagcgcaccgccatcaacgcc
ccgatgcagggcacggcggcggatatcatcaaacgcgccatgatcgacgtcgacggctgg
ctggccgacggcgacatcgacgccatgatggtcatgcaggtccacgacgaactggtcttc
gaagtcgcggaaagcgaggtcgacgctttcatggatcaggtcaagacccgcatggagaac
gccgccgaactcgatgtggcactgaccgtcgaggcggaaagcggtgccaactgggacgag
gcgcactga
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