Helicobacter pylori UM298: K748_02840
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Entry
K748_02840 CDS
T02757
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hem
Helicobacter pylori UM298
Pathway
hem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K748_02840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hem03019
]
K748_02840
03009 Ribosome biogenesis [BR:
hem03009
]
K748_02840
Enzymes [BR:
hem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K748_02840
Messenger RNA biogenesis [BR:
hem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K748_02840
Ribosome biogenesis [BR:
hem03009
]
Prokaryotic type
rRNA helicases
K748_02840
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
AAA_30
AAA_22
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
AGR62398
LinkDB
All DBs
Position
complement(310598..312076)
Genome browser
AA seq
492 aa
AA seq
DB search
MEFNQAPLPTEIDDDAYHKPSFNNLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN
EHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASI
MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHDAKVSEAIISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKPSNKKTHQHEQTRSFKKGQHKDRYP
KTSHHSKKPKRR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaatcaagcaccactccctacagaaattgatgatgacgcttatcataagccg
agttttaataatttgggcttaaaagaatcggttttaaaatccgtttatgaagccggtttc
acttccccaagccccattcaagaaaaggccattccggctgttttgcaaggccgagatgtt
atcgcgcaagcccaaacaggcacaggaaaaaccgccgctttcgctttgcccattatcaac
aaccttaaaaacaaccacaccatagaggctttagtgatcacgcccaccagagaattagcc
atgcaaattagcgatgagattttcaaattgggcaaacacactaggactaaaaccgtgtgc
gtgtatggaggccagagcgttaaaaaacaatgcgaatttattaagaaaaacccccaagtg
atgatcgctacaccaggaaggttgctagatcatttaaaaaacgaacgcatccataaattt
gtgcctaaagtggtcgttttagatgaaagcgatgaaatgctggatatggggtttttagac
gatattgaagagatttttgactacctccctagcgaagcgcagattttgcttttttcagcc
acgatgccagagccgattaaaagactagcggataagattttagaaaaccctattaaaatc
catatcgccccctctaatatcactaacactgacatcacccaacgcttttatgtgatcaat
gagcatgagagggctgaagcgatcatgcgtcttttagacacccaagcacccaaaaagagc
attgttttcacgcgcaccaaaaaagaagccgatgaattgcaccaattcctcgcttctaaa
aattacaaaagtaccgctttgcatggggatatggatcaaagggatcggcgcgcttctatc
atggcgtttaaaaaaaatgacgctgatgtgttggtggctacagatgtggcgagccgtggg
ctagacattagcggtgtaagccatgtgttcaattaccacttgcccctaaataccgagagt
tatatccatcgcatcgggagaaccgggcgagcgggtaaaaaaggcatggcgatcacttta
gtaacccccttagaatacaaagagcttttacgcatgcaaaaagaaattgattcagagatt
gaactttttgagatccccaccattaacgaaaatcagatcatcaaaaccttgcatgacgct
aaagtgtctgaagcaatcatcagcctttatgaacagcttaccgaaatttttgagccgtct
caattggttttaaaacttttgagtttgcagtttgaaaccagcaaaatcggcttaaaccag
caagaaattgatgcgattcaaaaccctaaagaaaaaacgccaaaaccctctaacaaaaaa
acgcaccagcatgagcaaacgcgttctttcaaaaagggtcagcacaaagacagataccct
aaaacaagccaccattctaaaaaacccaaacgccgttaa
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