Helicobacter pylori SNT49: HPSNT_03695
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Entry
HPSNT_03695 CDS
T01916
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
hen
Helicobacter pylori SNT49
Pathway
hen02020
Two-component system
hen02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hen00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HPSNT_03695
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPSNT_03695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hen03021
]
HPSNT_03695
Transcription machinery [BR:
hen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPSNT_03695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
AEN16889
UniProt:
G2MEC7
LinkDB
All DBs
Position
complement(760634..761878)
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AA seq
414 aa
AA seq
DB search
MAILRANLSPKNKLNATLKGWLPILQSELEDLEEVLKQNALDNPLIKIENKRIKNFSDRF
SAKNSSDHLENFATASKSLFETLEAQIIPPLFPTETSQKIAMDIISGLNSEGYFEENIEE
RAKILGVESEVYEKVHKRFSYLNPVGIGAKDVKESFLFQLESRELDDNELYEEARKIILN
LEKHHEFSKDFYYEKALKILKSFKNPPAIEFLEKEIEVIPELFIVEVDDEIIVRLNDESY
PTISLEENRFKDSDYLKEKLKEAKDLIDALNLRKATIYKIGLMLLEYQYDFFKGKKLRPL
KLLDLANEFNHSVSTISRAISNKYLACERGVFPIKHFFSTALDNSETSNAVIKDYLLELI
KNEDKKEPLSDAKILELIEEKFHLKMVRRTITKYRQLLNIASSSERKKLYLMRT
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcttacgcgcaaatcttagccctaaaaacaaactaaacgctaccttaaaaggg
tggctccccattttacaaagcgagcttgaagatttagaagaagtgttgaagcaaaacgcc
ctggataaccccttaatcaaaattgaaaacaaacgcatcaaaaattttagcgatcgattt
agcgctaaaaacagcagcgatcatttagaaaatttcgcaaccgcttctaaaagccttttt
gaaaccttagaggctcaaatcattccccccctctttcctactgaaacctctcaaaaaatc
gctatggatattatcagcgggttaaatagtgaagggtattttgaagaaaacattgaagaa
agggctaaaattttaggggtagagagcgaagtttatgaaaaagtgcacaagcgttttagt
taccttaatcccgttggcattggtgctaaagacgtgaaagagagctttttattccagtta
gagagtagggaattagacgataatgagctttatgaagaagcgcgaaaaatcattttaaat
ttagaaaaacaccatgaattttctaaagatttttattatgaaaaggctttaaagatttta
aaatcctttaaaaaccccccagccattgagtttttagaaaaggaaatagaagtcattcct
gaactttttattgtagaagtggatgatgaaatcatcgtgcgtttgaatgatgagagctac
ccgacgatcagtttagaagaaaatcgctttaaagatagcgattatttaaaagaaaaatta
aaagaggctaaagatttgattgatgcgctaaatttacgaaaagccacgatttataaaatc
ggtctcatgcttttagagtatcaatacgatttttttaagggtaaaaaattgcgccctttg
aaattattggatttagccaatgagtttaaccactctgtaagcacgatttcaagggccatt
tctaataaatatttggcatgcgaaaggggggttttccctattaagcatttctttagcacc
gccttagacaatagcgagacttcaaacgctgtgattaaagactatcttttagaattgatc
aaaaacgaagacaaaaaagagcctttgagcgatgctaagattttagaactcattgaagaa
aaattccatttgaaaatggtaagaagaacgatcaccaaataccgccaactgctcaatatt
gcttcttcaagcgaaaggaaaaagctctatttgatgcgcacttga
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