Helicobacter pylori SNT49: HPSNT_03935
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Entry
HPSNT_03935 CDS
T01916
Name
(GenBank) phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
hen
Helicobacter pylori SNT49
Pathway
hen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPSNT_03935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hen03019
]
HPSNT_03935
Messenger RNA biogenesis [BR:
hen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPSNT_03935
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
HDOD
KH_KhpA-B
KH_NusA_C
UPF0242
Motif
Other DBs
NCBI-ProteinID:
AEN16937
UniProt:
G2MEH5
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All DBs
Position
complement(805717..807306)
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AA seq
529 aa
AA seq
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MSMGLIYISLEVLVACLITALAMYYVMKKIYYARAQAVLKGASAKAKLMEFQAKSFVEAE
EMRMKSQECKLQQQYENKNLQLQTHFEKKEAHLKHLEAQHKEFVRDEKRYLEKEKKELEK
ERQILEQERENFKKQRAICKEAQAKALDAMLNYMAYTKDEIKSMILEQLEEELEAQKSAL
IRRYEKEAKEEGKKKSYAILAEATARFAGNYATENLTSRIALPCSDYVGRVIGKDGKNIE
AFKKVSGVDIEFSEDSSELCLSSFNLYRREVASETLKILIEDGRIQPNRIEEVYHRVARN
LEKELLSEGESVVLELELGVMEDELKILIGKMRYRSSFGQNALQHSKEVALLAGLIAEQL
GGDKKLARRAGILHDIGKALTQELGRDHVNLGVEVCKRHKEDPVVINAIYAHHGHEEILS
VECASVCAADALSAGRPGARRKSDEEYAKRMQALEEIALEFDGVEKAYAMESGRELRVIV
KSNQVRDNQVPIIARKIAKKIEESAQYVGEVGVQVVRESRFKTTATLKQ
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgagcatggggttaatttacatttcattagaagtcttggtagcgtgtttgattaccgct
ctagccatgtattatgtgatgaaaaagatctattacgctagagcgcaagccgttttaaaa
ggtgcttcagctaaagccaaattgatggagtttcaagcgaaatctttcgtggaagctgaa
gagatgcgcatgaaaagccaagaatgcaaattgcagcagcagtatgaaaacaagaatttg
caactccaaacccattttgaaaaaaaagaagcgcatttgaagcatttagaagcgcaacac
aaagaatttgtaagagatgaaaaacgctatttagaaaaagaaaaaaaagagcttgaaaaa
gaacgccaaattttagaacaagaaagagaaaattttaaaaaacagcgcgctatttgtaaa
gaagctcaagccaaagcgctagacgcgatgctcaattacatggcttataccaaagatgaa
attaaaagcatgattttagagcaattagaagaagaattagaagcccaaaaaagcgcctta
atcaggcgttatgaaaaagaagccaaagaagagggcaagaaaaaatcgtatgccatttta
gcggaagcgacagcccgttttgcgggtaattatgcgacagagaatttaacaagtcgtatc
gctttgccttgctcagattatgttggtcgtgtgataggcaaagacgggaaaaatattgaa
gcgtttaaaaaggtcagcggggtggatatagaatttagcgaagatagcagcgaattgtgt
ttgtctagtttcaatctttatcggcgtgaagtagcgagcgagacgcttaaaattttaata
gaagacggccgtatccagcctaacaggattgaagaggtttatcatagagtcgcacgcaac
ctggaaaaagaattgctttctgaaggggagagcgtggtgttagaattggagcttggggtt
atggaagatgaacttaaaattttaataggcaaaatgcgttatcgctccagttttgggcaa
aacgccttacagcattctaaagaagtcgctcttttagccggcttgattgcagaacagctt
gggggggataaaaagctcgccagaagagctggtattttgcatgatattggtaaagcgctc
acccaagagcttgggagagaccatgtgaatttaggcgttgaagtgtgcaagcgccataaa
gaagacccggttgtgatcaatgcgatttatgcccaccatgggcatgaagagattttgagc
gtggagtgcgcgagcgtgtgcgcagctgatgcactttctgcagggcgtcctggggctaga
agaaagagcgatgaagaatacgctaaacgcatgcaagctttagaagagatcgcgctagaa
tttgatggggtggaaaaagcgtatgcgatggagagcgggcgagaactaagagtgattgtc
aaatccaaccaagtcagggacaatcaagtgcctattattgccagaaagatcgctaaaaag
atagaagagagcgctcagtatgtgggcgaagtgggcgtgcaagtggtgcgagaaagccgt
ttcaaaacgaccgctacgctcaagcaataa
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