KEGG   Helicobacter pylori SNT49: HPSNT_04580
Entry
HPSNT_04580       CDS       T01916                                 
Name
(GenBank) vacuolating cytotoxin
  KO
K11028  vacuolating cytotoxin
Organism
hen  Helicobacter pylori SNT49
Pathway
hen03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:hen00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    HPSNT_04580
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:hen02000]
    HPSNT_04580
   02044 Secretion system [BR:hen02044]
    HPSNT_04580
   02042 Bacterial toxins [BR:hen02042]
    HPSNT_04580
Transporters [BR:hen02000]
 Other transporters
  Pores ion channels [TC:1]
   HPSNT_04580
Secretion system [BR:hen02044]
 Type V secretion system
  Autotransporter-1 (AT-1) family
   HPSNT_04580
Bacterial toxins [BR:hen02042]
 Type III toxins: Intracellular toxins
  Others
   Vacuolating cytotoxin
    HPSNT_04580
 Type II toxins: Membrane damaging toxins
  Pore-forming toxins, Other
   HPSNT_04580
SSDB
Motif
Pfam: VacA
Other DBs
NCBI-ProteinID: AEN17066
UniProt: G2MEM4
LinkDB
Position
930277..934263
AA seq 1328 aa
MEIQQTHRKINRPLVSLALVGALVSITPQQSHAAFFTTVIIPAIVGGIATGTAAGTVSGL
LGWGLKQAEEANKTPDKPEKVWRIQAGRGFNEFPNKEYDLYKSLLSSKIDGGWDWGNAAR
HYWVKGGQWNKLEVDMKDAVGTYKLSGLRNYTGGDLDVNMQKATLRLGQFNGNSFTSFKD
SADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSDKNAEISLYD
GATLNLASNSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDKNAAQA
GIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPNNTPSQSGAKNDKNESAKNDKQESS
QNNSNTQVINPPNSAQKTEIQPTQVIDGPFAGAKDTVVNINRINTNADGTIRVGGYTASL
TTNAASLNIGKGGVNLSNQASGRTLLVENLTGNITVDGPLMVNNQVGGYALAGSSANFEF
KAGEDTKNGTVTFNNDISLGRFVNLKVDAHTAYFNGNIYLGKSTNLRVNGHSAHFKNIDA
TKSDNGLNTSTLDFSGVTDKVNINKLTTSATNVNIKNFDIKELVVTTRVQSFGQYTIFGE
NIGDKSRIGVVSLQTGYSPAYSGGVTFKGGKKLVIDEIYHAPWNYFDARNVTDVEINKRI
LFGAPGYIAGKTGLMFNNLTLNSNASMDYGKDLDLTIQGHFTNNQGTMNLFVQDGRVATL
NAGHQASMIFNNLVDSTTGFYKPLIKINNAQNLTKNKEHVLVRARNIDYNLVGVQGASYD
NISASNTNLQDQFKERLALYNNNNRMDICVVRKDNLNDIKACGMAIGNQSMVNNPENYKY
LEGKAWKNTGINKTANNTTIAVNLGNNSTPTENGGNTTNLPTNTTSNARFASYALIKNAP
FAHYSATPNLVAINKHDFGTIESVFELANRSSDIDTLNANSGAQGRDLLQTLLIDSHDAG
YARTMIDNTSTNEITKQLNTATTTLNNIASLEHKTSSLQTLSLSNAMILNSRLVNLSRRH
TNHIDSFAQRLQALKGQRFASLESAAEVLYQFAPKYEKPTNVWANAIGGASLNNGGNASL
YGTSVGVDAYLNGEVEAIVGGFGSYGYSSFSNQANSLNSGANNTNFGVYSRIFANHHEFD
FEAQGALGSDQSSLNFKSALLQDLNQSYNYLGYSAATRASYGYDFAFFRNALVLKPSVGV
SYNHLGSTNFKSNSANQVALKNGASSQHLFNASANVEARYYYGDTSYFYMNAGVLQEFAH
FGSSNAVSLNTFKVNAARNPLNTHARVMMGGELKLAKEVFLNLGFVYLHNLISNIGHFAS
NLGMRYSF
NT seq 3987 nt   +upstreamnt  +downstreamnt
atggaaatacaacaaacacaccgcaaaatcaatcgccctctggtttctctcgctttagta
ggagcgttggtcagcatcacaccgcaacaaagtcatgccgcctttttcacaaccgtcatt
attccagccattgttgggggtatcgctacaggcaccgctgcaggaacggtctcagggctt
cttggctgggggctcaaacaagccgaagaagccaataaaaccccggataaacccgaaaaa
gtttggcgcattcaagcaggaagaggctttaatgaattccctaacaaggaatacgactta
tacaaatcccttttatccagtaagattgatggaggttgggattgggggaatgccgctagg
cattattgggtcaaaggcgggcaatggaataagcttgaagtggatatgaaagacgctgta
gggacttataaactctcagggctaagaaactacaccggtggggatttagatgtcaatatg
caaaaagccactctacgcttgggccaattcaatggcaattctttcacaagctttaaggat
agcgccgatcgcaccacgagagtggatttcaacgctaaaaatatcttaattgataatttt
ttagaaatcaataatcgtgtgggttctggagccgggaggaaagccagctctacggtttta
actttgcaagcttcagaagggatcactagcgataaaaacgcagaaatttctctttatgat
ggcgccacgctcaatttggcttcaaacagcgttaaattaatgggtaatgtgtggatgggc
cgtttgcaatacgtgggagcgtatttggccccttcatacagcacgataaacacttcaaaa
gtaacaggggaagtgaattttaaccacctcactgtgggcgataaaaacgccgctcaagca
ggcattatcgctagtaacaagactcatattggcacactagatttgtggcaaagcgcgggg
ctaaacattatcgcccccccagaaggcggctataaggataaacctaataataccccttct
caaagtggtgctaaaaacgacaaaaatgaaagcgctaaaaacgacaaacaagagagcagt
caaaacaatagcaacactcaggtcattaacccacccaatagcgcgcaaaaaacagaaatt
caacccacgcaagtcattgatgggccttttgctggcgccaaagacacggtggtcaatatc
aaccgcatcaacactaacgctgatggcacgattagagtgggagggtatacagcttctctt
accaccaatgcggctagtttaaatatcggcaaaggcggtgtcaatctgtccaatcaagcg
agcgggcgcacccttttagtggaaaatctaaccgggaatatcaccgttgatgggccttta
atggtgaataatcaagtgggtggttatgctttggcaggctcaagcgcgaattttgagttt
aaggctggtgaagataccaaaaacggtacagtcacttttaataacgatattagtttggga
agatttgtgaatttaaaagtggatgctcatacagcttattttaatggcaatatttatctg
ggaaaatccacgaatttaagagtaaatggccatagcgctcattttaaaaatattgatgcc
acaaagagcgataacgggctaaacactagcactttggattttagcggcgttacggacaaa
gtcaatatcaacaagctcactacatctgccactaatgtgaacattaaaaactttgacatt
aaggaattagtggttacaacccgtgttcagagttttgggcaatacactatttttggcgaa
aatataggcgataagtctcgcattggtgtcgttagtttgcaaacgggatatagcccggct
tattctgggggcgttacttttaaaggtggtaaaaaactggttatagatgaaatttaccat
gccccttggaattattttgacgctaggaatgttaccgatgttgaaatcaacaaaaggatt
ctttttggagccccaggatacattgccggcaaaacagggcttatgtttaacaacctaacc
ctaaacagcaacgcaagcatggattatggtaaagatttagacttaaccattcaagggcat
ttcaccaacaatcaaggcacgatgaatctttttgtccaagatgggcgtgtagcgacctta
aatgcaggccatcaagcaagcatgatatttaataatttagtggatagcacgaccggattt
tacaaaccactcattaagatcaataacgctcaaaacctcactaaaaataaagaacatgtt
ttagtgagggcgcgaaacattgattataatttagtaggagtgcaaggcgctagttatgac
aatatttctgcaagcaataccaatctgcaagatcaattcaaagagcgcctagccctttat
aacaacaacaaccgcatggatatttgtgtggtgcgaaaagacaatctcaatgacattaaa
gcatgcgggatggctatcggcaatcaaagcatggtgaataaccctgaaaattacaagtat
cttgaaggtaaggcatggaaaaatacagggattaataaaacggctaacaacaccacaatc
gctgttaatttaggcaacaattctacgcctactgagaatggtggcaataccacaaattta
cctacaaacaccactagcaatgcgcgtttcgctagctacgctctcatcaagaacgctcct
ttcgctcattacagcgccactcctaatttagtcgctatcaataagcatgattttggcact
attgaaagcgtgtttgaattggctaaccgctctagtgatattgacacgcttaatgctaac
tcaggcgctcaaggcagggatctcttacaaaccttattgattgatagccatgatgcgggt
tatgccagaacaatgattgataacacaagcactaatgaaatcaccaagcaattgaatacg
gccactaccactttaaacaacatagccagtttagagcataagacaagcagcttacaaact
ttgagcttgagtaacgcgatgattttaaattctcgtttagtcaatctctctagaaggcac
accaaccatattgactcgttcgcccaacgcttacaagctttaaaaggccaaagattcgct
tctttagaaagcgcggcagaagtgttgtatcaatttgcccccaaatatgaaaaacccacc
aatgtttgggctaacgctattgggggagcgagcttgaataatggcggcaacgcttcattg
tatggcacaagtgtaggcgtagacgcttaccttaacggggaagtggaagccattgtgggc
ggttttggaagctatggttatagctcttttagcaatcaagcgaactctcttaactctgga
gccaataacacgaattttggcgtgtatagccgtatctttgctaaccatcatgaatttgac
tttgaagctcaaggggcgctagggagtgatcaatcaagcttgaatttcaaaagcgctcta
ctgcaagatttgaatcaaagctataattacttaggctatagcgctgcaacaagagcgagc
tatggttatgactttgcgttttttaggaacgctttagtgttaaaaccaagcgtgggcgtg
agctataaccatttaggttcaaccaactttaaaagcaacagcgctaatcaagtggctttg
aaaaatggcgcaagcagtcagcatctattcaacgctagcgctaatgtggaagcgcgttat
tattatggagacacttcatacttctacatgaatgctggagttttacaagaattcgctcac
tttggttctagcaatgcggtgtctttaaacacctttaaagtgaatgccgctcgcaaccct
ttaaatacccatgccagagtgatgatgggtggggaattgaaattagctaaagaagtgttt
ttgaatttgggctttgtttatttgcacaatttgatttccaatataggccatttcgcttcc
aatttaggaatgaggtatagtttctaa

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