Helicobacter pylori SNT49: HPSNT_07220
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Entry
HPSNT_07220 CDS
T01916
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hen
Helicobacter pylori SNT49
Pathway
hen03030
DNA replication
hen03430
Mismatch repair
hen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPSNT_07220 (dnaE)
03430 Mismatch repair
HPSNT_07220 (dnaE)
03440 Homologous recombination
HPSNT_07220 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hen03032
]
HPSNT_07220 (dnaE)
03400 DNA repair and recombination proteins [BR:
hen03400
]
HPSNT_07220 (dnaE)
Enzymes [BR:
hen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HPSNT_07220 (dnaE)
DNA replication proteins [BR:
hen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HPSNT_07220 (dnaE)
DNA repair and recombination proteins [BR:
hen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HPSNT_07220 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
AEN17565
UniProt:
G2MFL9
LinkDB
All DBs
Position
complement(1455470..1459105)
Genome browser
AA seq
1211 aa
AA seq
DB search
MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK
EGIKPIIGMEAYIHNDDNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGFYYFPR
INKKLLREHSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEYQEIFEDD
FYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTL
NDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPPS
FKFTKAYAQEEGLDFEDDASYFAYKAREALKERLILVPKEKHDQYQERLEKEIEVITNMK
FPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFLNPER
VSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPYKEA
DDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWEYSLNLENLNR
NAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLKTLTVI
DDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGLNKRLRPSSFE
DIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTIVYQEQVMQIV
QTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANLWDLIVKFAGY
GFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEVRALEIEVMPP
HINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKGDYESLEDFIS
RVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANEMMQGGNSLFG
AMEGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIKGFKNLVKSID
IEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLFEKQLNALEELDI
NKPLVFKCKIEEQEEVARLRLFEILDLESAREVKIPKARYKDPDKQKEEVREIPPIEILA
ANSCSLAIVLENDVKKEFLRQIKESALKHQGKRPLYLIIKDKDKQFKIQSDLMVNEKIKD
DFKGLEWRDLA
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagaataaagctttcacgcatttgcacttgcacacggaatattcgcttttagac
ggggcgaacaagattaaaattctagccaaacgcattaaagaattgggcatgaaaagcgtg
agcgtaaccgaccatgggaacatgtttggagcgattgatttttatacgagcatgaaaaaa
gaaggcattaagcctatcatcggcatggaagcgtatatccataatgacgacaacctttct
agcaaagaaaccaagcaacgcttccatttgtgcctgttcgctaaaaaccaagagggctat
gaaaatttgatgttcttaagctctatggcgtatttagaggggttttattatttcccgcgc
atcaataaaaagcttttaagagagcattctaaaggcattatcgcttctagtgcgtgcttg
caaggggaagtcaattaccatttgaatactcataatgagagaaaccgcaagtatggggct
aaaggctatgatgaagccaaaaaaatcgcttgcgaataccaggagatttttgaagacgac
ttttatttagaaatcatgcgtcatggcattttggatcagcgattcattgatgagcaagtc
attaaaatgtctttagaaacagggttaaaaatcattgccacaaacgacacccactacacc
atgcccaatgacgctaaggctcaagaagtggcgatgtgcgtagcgatgggtaaaacccta
aacgataaggggcgcttgaaacactccgtgcatgagttttacatcaagtcccctgaagaa
atggcaaagctctttgcagatattccagaagctttagaaaacacccaagaaatcgctgat
aaatgcgttttagagattgatttaaaagacgataaaaagaaccccccaacccccccaagc
ttcaaattcactaaagcttacgctcaagaagagggattggattttgaagatgacgcttct
tatttcgcttataaggctagagaggccctaaaagagcgcttaattttagtgccaaaagaa
aagcatgatcaataccaagaacgcttagaaaaagaaattgaagtcattacgaacatgaaa
ttcccagggtatatgctgattgtgtgggattttatccgttacgctaaagaaatgggcatt
cctgtagggcctggtagggggagcgcggccgggagtttggtggcttttgctttaaaaatc
actgatattgaccctttgaaatacgatttgctctttgaaaggtttttaaaccctgaaaga
gtcagcatgcctgatattgatacggatttttgccaacgccggcgtaaggaaatcatagaa
tacatgattgaaaaatacggcaaatacaatgtggctcaagtcatcacctttaataagatg
ttggctaaaggcgtgatcagagatgtcgcaagggttttggacatgccttataaagaagcc
gatgattttgccaaactcattcctaaccgcttaggcatcacgcttaagggctatgaaaaa
aatggcgagttcatagagggggcgtgggaattagagcctaaaatcaaggaattagtagag
agtaatgaattagccaaacaagtgtgggagtattcgctcaatttagagaatttaaaccgc
aacgcaggcgtgcatgcagcagccttagtggtggatagccaaaaagagttgtggcacaag
acccctttgtttgcctctgaaaaaaccggcggtatcgttacgcaatattccatgaagtat
ttagagccggtggatttgatcaagtttgacttcttggggcttaaaaccttgaccgtgatt
gatgatgcgcttaaaatcattaaaacgcagcataaaattagcgtggattttttatcgttg
gatatggacgatccgaaagtgtataaaacgatccaaagcggggatacggtggggatattc
cagattgaatccggaatgtttcaagggcttaacaaacgcttaaggccttcaagctttgaa
gacattatcgctattatcgcactaggcagaccaggacccatggaatcaggcatggtagat
gattttgtgaatagaaagcatggcattgagcctatcgcttatgcgtttaaagaattagag
ccgattttaaagcccacttacggaacgatcgtctatcaagagcaagtgatgcaaatcgtg
caaacgattggcggttttagtttgggtgaagcggatctcatccgccgcgctatggggaaa
aaagacgctcaaatcatggcggacaataaggctaagtttgtagaaggcgctaagaattta
gggcatgatggccaaaaggcggctaatttgtgggatttgatcgttaaatttgccggctat
ggtttcaacaaatcgcattcggccgcttatgcgatgatcactttccaaacggcgtattta
aagacttattacaagcatgagttcatggcagcgatgctcactagcgaatccaataagatt
gaatccgtggcgcgttatattgatgaggtcagggctttagaaattgaagtgatgcccccg
cacatcaattcttctatgcaagatttcagcgtggcggagtttaaaaatcaaaaaggcgag
ctagaaaagaaaatcgtgtttggtttaggagcggttaaaggggttgggggtgagccgatt
aaaaacatcattgaagaaagggctaaaggggattatgagagtttagaagattttatttca
cgggtggatttttctaaactcactaaaaaatctttagagccattagtgaaatcagggagc
ttggacaatttaggctacacccgaaaaaccatgctcgctaacttggatctgatctgtgat
gctgggcgcgctaaagacaaggctaatgaaatgatgcaagggggtaactccctttttgga
gccatggaaggcgggacaaaagagcaggttattttagacatgattgatttgggcgaacat
gacgctaaaacgcttttagaatgcgaatacgagactttaggcatccatgtttcaggcaat
cccttagacgagtttaaagaagaaattaagggctttaaaaatttagtcaaaagcattgat
attgaagagttagagattggctcgcaagcgtatttgctgggtaaaatcatggaagtcaaa
aagaaaattggcaaacgaagcggtaagccttatggcacagcggacattttggacagatac
ggcaagtttgaactcatgctgtttgaaaagcaattaaacgctttagaagagttggatatt
aataagcctctagtgtttaagtgcaaaattgaagagcaagaagaagtggcgcgattaagg
ctttttgaaatcttggatctagagagcgctagggaggttaaaatccctaaagcccgttat
aaagaccctgacaagcaaaaagaagaggtgcgcgaaatcccccctattgaaatactcgcc
gccaactcttgctctttagcgatcgtgttagaaaacgatgtgaaaaaagagtttttaaga
caaatcaaagagagcgctttaaaacaccagggcaaacgccccttgtatttgatcatcaaa
gataaggataagcaattcaaaatccaaagcgatttaatggtgaatgaaaagattaaggac
gattttaaagggttagagtggagggatttggcttga
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integrated database retrieval system
