Helicobacter pylori SNT49: HPSNT_07735
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Entry
HPSNT_07735 CDS
T01916
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hen
Helicobacter pylori SNT49
Pathway
hen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPSNT_07735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hen03400
]
HPSNT_07735
Enzymes [BR:
hen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPSNT_07735
DNA repair and recombination proteins [BR:
hen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPSNT_07735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Motif
Other DBs
NCBI-ProteinID:
AEN17664
UniProt:
G2MCP7
LinkDB
All DBs
Position
complement(1561453..1564452)
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYRALNKGFDYQILACKDLKESELAKEVISYFKPNTKAILFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQEAIIIAPISALLHPLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEIVDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDTECESIKEFDPTTQMSL
KEDWLEIEIPPTLFSLDEPSYKDLKTKVEQSPFNSFSKDLTSFGLWFLGEKANDLLHAYK
SVISPKALEEIQELASLNELDCERFKSLKVLENPQGYEDLEIHAHALESFIALHSNRKIT
LLAPNKTILDNAVSALERNNIECVIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNPGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYWGEDKLLLPVENLHLIARYVAQS
DSVPIKDRLGKGSFLKLKAKVRTKLLEIAGKIIELAAERNLILGKKMETHLAELEVFKSH
AGFEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVELGQIDALVGTHVILGAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKTKLEDLIPKLKIAI
LHSQINANESEEIMLEFAKGSYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGRKEGFCYFLIEDQKNLNEQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLGVSAFLNPELIASDSLRLD
LYRRLSLCENVDEVGQIHEEIEDRFGKIDDLSAQFLQIITLKILANQLGIIKLSNFNQNI
TLTYSDEKKESLKAPSKDDNDILETLLKHLRAQISLKRR
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagcctttatagagccttaaacaaaggctttgattatcaaatactcgct
tgtaaggatcttaaagagtccgagctagctaaagaagtcataagctattttaagccaaat
accaaagccattcttttcccggagtttagggctaaaaaaaacgacgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttaagggagttttatcaagccttagaaaac
aagcaagaagcgatcatcattgccccgattagtgcgttattacaccctttacctaaaaaa
gaacttttagagagctttaaaatcactcttttagaaaaatataaccttaaggatttgaaa
gacaagcttttttattatggttatgaaattgtagacttagtggaagtggaaggtgaagcg
agctttaggggggatattgtggatatttatgcgcccaattctaaagcgtatcgcttgagt
ttttttgacacggagtgtgagagcattaaggaatttgaccccaccactcaaatgagcctt
aaagaagattggttagaaattgaaatcccccccacgctttttagtttggacgaaccatct
tataaggatctgaaaacaaaagtggagcaaagcccattcaatagcttttctaaagattta
accagttttggtttgtggtttttaggagaaaaagcgaacgatttgttgcatgcctataaa
agcgttataagccctaaagctttagaagaaattcaagaattagcgagcttaaacgaattg
gattgtgagcgtttcaaatctttaaaggttttagaaaacccgcaaggctatgaagattta
gaaatccatgcgcatgccctagaaagctttatagctttgcattcaaatcgtaaaatcacg
ctcctagcccctaacaaaacgattttagacaatgcggtaagcgcgcttgaaaggaacaat
attgaatgcgtcatcgctccctttgtgctaaactttaaaacccctgatgggatttttatt
tcgctcaactcttttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaatgag
ttgaatccgggcgaatgggtggtgcatgatgattatggggtaggcgtgttttctcaatta
gtccaacacagcgttttagggagcaagagggattttttagaaatcgcttattggggcgaa
gacaaactgctattaccggtggaaaatttgcatctaatcgctcgctatgtggcacaaagc
gatagcgtgcctattaaagaccggctagggaaagggagttttcttaaactaaaagctaaa
gttaggactaagcttttagagattgcaggcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggagacgcatttagcggagttggaagtctttaaatcgcat
gcggggtttgaatacacaagcgatcaagaaaaagccatcgctgaaatttcaaaggattta
agctctaagagagtgatggacagattgttgagtggggatgtgggttttgggaaaacagaa
gtggcgatgcatgcgattttttgcgcgtttttgaacggctttcaaagcgctctggtcgtg
cctactaccttattagcgcaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgcgagcgaaaaaaacaagcttttaaaggcg
gtggaattagggcagattgatgcgcttgtaggcacgcatgtgattttaggcgcgaaattt
aaaaacttgggcttagtggtggtggatgaagagcataaatttggcgtgaaacaaaaagaa
gctttaaaagaattgagcaaaagcgtgcattttttaagcatgtccgctacgcctatcccg
cgcactttaaacatggcgctttctcaaattaaaggcattagctctttaaaaaccccgccc
acagacagaaaacccagccgcacttttttgaaagaaaagaatgatgaactcttaaaagag
attattcatagagaattacgccgtaacgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaagatttaatccctaaactcaaaatcgctatt
ttgcattcccaaattaacgctaacgagagcgaagaaatcatgctggagtttgctaagggg
agctatcaggttttattatgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgatcattatagataacgcgcaaaattttggactggctgatttgcaccaattaaga
gggcgtgtggggaggggcagaaaagaaggcttttgctactttctcatagaagatcaaaaa
aatttgaatgaacaagccctaaaacgcttgctcgctttggaaaaaaattcgtatttaggc
agtggggagagtatcgcctatcatgatttagaaatcagggggggcgggaatttgctcggg
caagatcagagcgggcatattaaaaatatcggttatgcgctctatacgcgcatgcttgaa
gacgcgatttatgaattgagtggggggaagaaaaggcttgaaaaaagcgtagaaatccaa
cttggcgtgagcgcttttttaaaccctgaactcatcgcaagcgatagtttgagattggat
ttgtatcgccgtttgagtttgtgtgaaaatgtagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggcaaaatagacgatttgagcgctcaatttttgcaaatcattacg
cttaaaatcttagccaaccagcttggcatcatcaaactttctaatttcaatcaaaacatc
acccttacttatagcgatgaaaagaaagaaagcttgaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcgcgctcaaatttctttaaagcggcgttaa
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