Helicobacter pylori Puno120: HPPN120_07135
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Entry
HPPN120_07135 CDS
T01919
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hep
Helicobacter pylori Puno120
Pathway
hep03030
DNA replication
hep03430
Mismatch repair
hep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPPN120_07135 (dnaE)
03430 Mismatch repair
HPPN120_07135 (dnaE)
03440 Homologous recombination
HPPN120_07135 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hep03032
]
HPPN120_07135 (dnaE)
03400 DNA repair and recombination proteins [BR:
hep03400
]
HPPN120_07135 (dnaE)
Enzymes [BR:
hep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HPPN120_07135 (dnaE)
DNA replication proteins [BR:
hep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HPPN120_07135 (dnaE)
DNA repair and recombination proteins [BR:
hep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HPPN120_07135 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AEN16008
LinkDB
All DBs
Position
complement(1432549..1436184)
Genome browser
AA seq
1211 aa
AA seq
DB search
MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK
EGIKPIIGMEAYIHNDDNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGFYYFPR
INKKLLREHSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEYQEIFEDD
FYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTL
NDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPPS
FKFTKAYAQNEGLNFEDDASYFAYKAREGLKERLVLVPKEKHDQYKERLEKEIEVITSMK
FPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFLNPER
VSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPYKEA
DDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWEYSLNLENLNR
NAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLKTLTVI
DDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGLNKRLRPSSFE
DIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTIVYQEQVMQIV
QTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANLWDLIVKFAGY
GFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEVRALEIEVMPP
HINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERVKGDYKSLEDFIS
RVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANEMMQGGNSLFG
AMDGGTKEQVILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIKGFKNLVKSID
IEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLFEKQLSALEELDI
NKPLVFKCKIEEQEEVARLRLFEILDLESAREVKIPKARYKDPEKQKEEVREIPPIEILA
ASSCSLAIVLENDVKKEFLRQIKESALKHQGKRPLYLIIKDKDKQFKIQSDLMVNEKIKD
DFKGLEWRDLA
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagaataaagccttcacgcatttgcacttgcacacggaatattcgcttttagat
ggggcgaataagattaaaattctggccaaacgcattaaagaattgggcatgaaaagcgtg
agcgtaactgatcatgggaacatgtttggagcgattgatttttatacgagcatgaaaaaa
gaaggcattaagcctatcatcggcatggaagcgtatattcataatgacgacaacctttct
agcaaagaaaccaagcaacgcttccatttgtgcttgttcgctaaaaaccaagagggctat
gaaaatttgatgttcttaagctctatggcgtatttagaagggttttattatttcccgcgc
atcaataaaaaacttctaagggagcattctaaaggcattatcgcttctagcgcgtgcttg
caaggggaagtcaattaccatttgaatactcataatgagagaaaccgcaagtatggggct
aaaggctatgatgaagccaaaaaaatcgcttgcgaataccaagagatttttgaagacgac
ttttatttagaaatcatgcgccatggcattttagatcagcgattcattgatgagcaagtc
attaaaatgtctttagaaacggggttaaaaatcatcgccaccaacgacacccactacacc
atgcctaatgacgctaaggctcaagaagtagcgatgtgcgtagcgatgggtaaaacccta
aacgataaggggcgcttgaaacactccgtgcatgagttttatattaagtcccctgaagaa
atggcaaagctctttgcagatattccagaagctttagaaaacacccaagaaatcgctgat
aaatgcgttttagagattgatttaaaagacgataaaaagaaccccccaacccctccaagc
ttcaaattcactaaagcttacgctcaaaatgaagggctgaattttgaagatgacgcttct
tatttcgcctataaggctagagagggcttgaaagaacgcttggttttagtgccaaaagaa
aagcatgatcaatacaaagaacgcttagaaaaagaaattgaagtcattacgagcatgaaa
ttcccgggatatatgctgattgtgtgggattttatccgttacgctaaagaaatgggcatt
cctgtagggcctggtagggggagtgcggctgggagtttggtggcttttgctttaaaaatc
acggatattgaccctttgaaatacgatttgctctttgaaaggtttttaaaccctgaaaga
gtcagcatgcctgatattgatacggatttttgccagcgccggcgtaaggaaatcatagaa
tacatgattgaaaaatacggcaaatacaatgtggctcaagtcatcacctttaataagatg
ttggctaaaggcgtgatcagagatgttgcaagggttttggacatgccttataaagaagcc
gatgattttgccaaactcattcctaatcgcttaggcatcacgcttaagggctatgaaaaa
aatggcgagttcatagagggggcgtgggaattagagcctaaaatcaaggaattagtagag
agtaatgaattagccaaacaagtgtgggagtattcgctcaatttagagaacttgaatcgc
aacgcaggtgtgcatgcggcagccttagtggtggatagccaaaaagagttgtggcacaaa
acccctttatttgcctctgaaaaaaccggtggtatcgttacgcaatattccatgaagtat
ttagagccggtggatttgattaagtttgactttttggggcttaaaaccttgaccgtgatt
gatgatgcgcttaaaatcattaaaacgcagcataaaattagcgtggattttttatcgttg
gatatggacgatccgaaagtgtataaaacgatccaaagcggggatacggtggggatattc
cagattgaatccgggatgtttcaagggcttaacaaacgcttaaggccttcaagctttgaa
gacattatcgctattatcgcgctaggcagaccagggcccatggaatcaggcatggtagat
gattttgtaaacagaaagcatggcattgagcctatcgcttatgcgtttaaagaattagag
ccgattttaaagcccacttacggcacgatcgtctatcaagagcaagtgatgcaaatcgtg
caaactatcggcggttttagtttgggtgaagcggatctcatccgccgtgctatggggaaa
aaagacgctcaaatcatggcggacaataaggctaagtttgtagaaggcgctaaaaattta
gggcatgatggccaaaaagcggctaatttgtgggatttgatcgttaaatttgccggctat
ggtttcaacaaatcgcattcggccgcttatgcgatgatcactttccaaacggcgtattta
aagacttattacaagcatgagttcatggcagcgatgctcactagcgaatccaataagatt
gaatccgtggcacgctatattgatgaagtcagggctttagaaattgaagtgatgcccccg
cacatcaattcttctatgcaagatttcagcgtggcggagtttaaaaaccaaaagggcgag
ttagaaaagaaaatcgtgtttggtttaggagcgattaaaggggttgggggtgagccgatt
aaaaacatcattgaagaaagggttaaaggggattataagagtttagaagattttatttca
cgggtggatttttctaaactcactaaaaaatctttagagccattagtgaaatcagggagc
ttggataatctaggctacacccgaaaaaccatgctcgctaacttggatctgatctgtgat
gctgggcgcgctaaagacaaggctaatgaaatgatgcaagggggtaactccctttttggg
gcaatggatggcgggacaaaagagcaggttattttagacatgactgatttgggcgagcat
gacgctaaaacgcttttagaatgcgaatacgagactttaggcatccatgtttcaggcaat
cccttagacgagtttaaagaagaaattaagggctttaaaaatttagtcaaaagcattgat
attgaagagttagaaatcggctcgcaagcttatttgctgggtaaaatcatggaagttaaa
aagaaaattggcaaacgaagcggtaagccttatggcacagcggacattttggacagatac
ggcaagtttgaactcatgctgtttgaaaagcaattgagcgctttagaagagttggatatt
aataagcctttagtgtttaaatgcaagattgaagagcaagaagaggtcgcgcgattaagg
ctttttgaaatcttggatttagagagtgctagagaggttaaaatccctaaagcccgttat
aaagaccctgaaaagcaaaaagaagaggtgcgcgaaatcccccccattgaaatactcgcc
gccagttcttgctctttagcgatcgtgttagaaaacgatgtgaaaaaagagtttttaaga
caaatcaaagagagcgctttaaaacaccagggcaaacgccccttgtatttgatcatcaaa
gacaaggataagcaattcaaaatccaaagcgatttaatggtgaatgaaaagattaaggac
gattttaaagggttagagtggagggatttagcttga
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integrated database retrieval system
