Helicobacter pylori Rif1: C695_00015
Help
Entry
C695_00015 CDS
T02317
Name
(GenBank) 2-dehydro-3-deoxyphosphooctonate aldolase
KO
K01627
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:
2.5.1.55
]
Organism
her
Helicobacter pylori Rif1
Pathway
her00541
Biosynthesis of various nucleotide sugars
her01100
Metabolic pathways
her01250
Biosynthesis of nucleotide sugars
Module
her_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
her00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
C695_00015
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
her01005
]
C695_00015
Enzymes [BR:
her01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.55 3-deoxy-8-phosphooctulonate synthase
C695_00015
Lipopolysaccharide biosynthesis proteins [BR:
her01005
]
Lipid A
C695_00015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAHP_synth_1
DUF3657
Motif
Other DBs
NCBI-ProteinID:
AFV42818
LinkDB
All DBs
Position
complement(1115..1945)
Genome browser
AA seq
276 aa
AA seq
DB search
MKTSKTKTPKSVLIAGPCVIESLENLRSIATKLQPLANNERLDFYFKASFDKANRTSLES
YRGPGLEKGLEMLQTIKEEFGYKILTDVHESYQASVAAKVADILQIPAFLCRQTDLIVEV
SQTNAIVNIKKGQFMNPKDMQYSVLKALKTRDKSIQSPTYETALKNGVWLCERGSSFGYG
NLVVDMRSLKIMREFAPVIFDATHSVQMPGGANGKSSGDSSFAPILARAAAAVGIDGLFA
ETHVDPKNALSDGANMLKPDELEQLVTDMLKIQNLF
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacttctaaaacaaaaacccctaaatccgttttaatcgctgggccatgcgtcatt
gagagcttagaaaatctaagaagtatcgccactaaattgcaacccctagccaacaacgag
cggttggatttttattttaaagcgagttttgataaggcgaaccgcacgagtttagagagt
tacagagggcctggtttagaaaaaggcctagaaatgttacaaacgatcaaagaggaattt
ggttataaaatcttaaccgatgtgcatgagagttatcaagcaagcgtggcagccaaagtg
gcggatattttacaaatcccggcgtttttgtgccgccaaacggatctgattgtagaagtg
agccagactaacgctattgtcaatatcaaaaaagggcaattcatgaacccaaaagacatg
caatattctgttctaaaggcccttaaaacgagagataaaagcattcaaagccccacttat
gaaacagcgttaaaaaatggcgtgtggctgtgtgaaagggggagcagctttgggtatggg
aatttagtggtggatatgcgctctttaaaaatcatgcgagaatttgcccctgtgattttt
gacgctacccatagcgtgcaaatgccagggggagcgaacgggaaaagttcaggagacagc
tcttttgcccctattttagcgagagctgcggcggcggtggggattgatgggttgtttgct
gaaacgcatgttgatcctaaaaacgccctaagcgatggagcaaacatgctaaaacctgac
gagctagaacaattagtaaccgacatgttaaaaatccaaaatttattttaa
DBGET
integrated database retrieval system
