Helicobacter pylori Rif1: C695_01245
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Entry
C695_01245 CDS
T02317
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
her
Helicobacter pylori Rif1
Pathway
her03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
her00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C695_01245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
her03019
]
C695_01245
03009 Ribosome biogenesis [BR:
her03009
]
C695_01245
Enzymes [BR:
her01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C695_01245
Messenger RNA biogenesis [BR:
her03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C695_01245
Ribosome biogenesis [BR:
her03009
]
Prokaryotic type
rRNA helicases
C695_01245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
P-loop_SecA
AAA_30
AAA_22
UvrD-helicase
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AFV43064
LinkDB
All DBs
Position
255587..257065
Genome browser
AA seq
492 aa
AA seq
DB search
MELNQPPLPTEIDGDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN
EHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSI
MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKPSNKKTPQHERARSFKKGQHRDRHP
KTNHYSKKPKRR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggaattgaatcaaccaccactccctacagaaattgatggtgacgcttatcataagccg
agttttaatgatttgggcttaaaagaatcggttttaaaatccgtttatgaagccggcttc
acttccccaagccccattcaagaaaaggccattccggctgttttgcaaggccgagatgtc
atcgcacaagcccaaacaggcacaggaaaaaccgccgctttcgctctgcccattatcaac
aaccttaaaaacaaccacaccatagaagccctagtgatcacgcccaccagagaattagcc
atgcaaattagcgatgagattttcaaattgggcaaacacaccaggactaaaaccgtgtgc
gtgtatggaggccagagcgttaaaaagcaatgcgaattcattaagaaaaatccccaagtg
atgatcgctacaccaggaaggctgctcgatcacttaaaaaacgaacgcatccataaattt
gtgcctaaagtggtcgttttagatgaaagcgatgaaatgctggatatggggtttttagac
gatattgaagagatttttgactacctccctagcgaagcgcagattttgcttttttcagcc
acgatgccagagccgattaaaagactagcggataagattttagaaaaccctattaaaatc
catatcgctccttctaatatcactaacaccgacatcacccaacgcttttatgtgatcaat
gagcatgagagggccgaagcgatcatgcgccttttagacacccaagcacccaaaaagagc
attgttttcacgcgcactaaaaaagaagccgatgaattgcaccaattccttgcttctaaa
aattacaaaagcaccgccttgcatggggatatggatcaaagggatcggcgctcttctatc
atggcgtttaaaaaaaatgacgctgatgtgttggtggctacagatgtggcgagtcgtggg
ctagatattagcggtgtaagccatgtgtttaattaccacttgcccctaaacactgagagc
tatatccatcgcatcgggagaaccgggcgagcgggcaaaaaaggcatggcgatcacttta
gtaacccctttagaatacaaagagcttttacgcatgcaaaaagaaattgattcagagatt
gaactttttgaaatccccaccattaacgaaaatcagatcatcaaaaccttgcatgacgct
aaagtgtctgaagggatcatcagcctttatgaacagcttaccgaaatttttgagccgtct
caattggttttaaaacttttgagtttgcagtttgaaaccagcaaaattggcttaaaccag
caagaaattgacgcgattcaaaaccctaaagaaaaaacgccaaaaccctctaacaaaaaa
acgccccaacatgagcgagcgcgttctttcaaaaagggtcagcacagagacagacaccct
aaaacaaaccattattctaaaaaacccaaacgccgttaa
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