Helicobacter pylori Rif1: C695_01765
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Entry
C695_01765 CDS
T02317
Name
(GenBank) single-stranded-DNA specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
her
Helicobacter pylori Rif1
Pathway
her03410
Base excision repair
her03430
Mismatch repair
her03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
her00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C695_01765
03430 Mismatch repair
C695_01765
03440 Homologous recombination
C695_01765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
her03400
]
C695_01765
DNA repair and recombination proteins [BR:
her03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
C695_01765
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
C695_01765
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C695_01765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Fe-S_biosyn
GLUCM-like_C
Motif
Other DBs
NCBI-ProteinID:
AFV43164
LinkDB
All DBs
Position
complement(354893..356443)
Genome browser
AA seq
516 aa
AA seq
DB search
MKQKLKAQIKERMASIAYNEKGFPSPFLFKDLKKAALKIIEAMRTNTEILVVGDYDADGV
ISSAIMAKFFESLNYKHVRIAIPNRFMDGYGISKKFLEKHHAPLIITVDNGINAFEAARF
CKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFNIAPLINSAGRMQDAKMALDFLSANNSQDGYSLYERLKACNLKRKMIQQQVF
EEAFKHAMVGEKIIVAFKDNWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSSN
IDLIDALNGVSSLLLGYGGHRQACGLSVEKNNIISLFETLENFDFKVLPFCKTEPPLTLK
LKDIDRELLEIIEMGEPYGQENPEPLFQAKNLEVIEEKIIKESHQVLRFKDKECVKEAIY
FSAERFLKAGEKVSVLFSVELDECSNEPKMFVKSLL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcttaaagctcaaatcaaagagcgcatggcttctatcgcttataatgaa
aaagggtttcctagcccctttttatttaaagacttgaaaaaagccgcgctcaaaatcata
gaagccatgcgcacaaacacagaaattttagtggtgggcgattatgacgctgacggcgtg
attagctctgctatcatggcaaaattttttgaaagcctgaactataagcatgtccgcatt
gcaatccctaatcgcttcatggatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataacgggattaacgcctttgaagccgcgcgattt
tgtaaagaaaaaaattacacccttatcatcacagatcaccattgcttacaccatgatgaa
gtcccagacgcttatgcggtgatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgcggggcgttggtagcgttttatttgtgctatgggatccatcagcttttagga
aaagaaaaaagccattctagtgagttattatgtttagcgggcgtggcgactattgctgac
atgatgcctttgactttttttaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatccttaggggcgatgggttttttgcgccaaagagaagtttttagaaaacgctct
ttaaaagcgagtgatatttcttttaatatcgcccccttaatcaactccgcagggcgcatg
caagatgcgaaaatggctttagattttttaagcgcgaataattctcaagatggctattct
ttgtatgaacgcttgaaagcatgcaatttgaagcgtaaaatgatccaacagcaggttttt
gaagaagcttttaagcatgcgatggttggagaaaaaattatcgtcgcttttaaggacaat
tggcatgagggagtgctggggattgtggcttcaaaattagtggaagccactcaaaagcca
agcctggtttttacctttaaagaaggggtgtataaagggagcgctcgtagctcttcaaac
attgacttgattgacgctttgaatggggtttcttctttattgctcggctatggagggcat
aggcaagcttgcgggttgagcgttgaaaaaaacaatatcatctcgctctttgaaacttta
gaaaattttgattttaaagttttacctttttgtaaaacagagccccctttaacgctcaaa
ttaaaagacattgacagagagcttttagagattatagaaatgggcgaaccttatgggcaa
gaaaaccctgaacccctattccaagcaaaaaatttagaagtcatagaagaaaaaatcatt
aaagaaagccaccaggttttgcgttttaaggataaagaatgcgtcaaagaggctatttat
tttagcgctgagcggtttttgaaagcgggcgaaaaggtgagcgtgctttttagcgtggaa
ttagatgagtgttctaatgagcctaaaatgtttgttaaaagtttgttgtag
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