Helicobacter pylori Rif1: C695_01965
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Entry
C695_01965 CDS
T02317
Name
(GenBank) primosome assembly protein PriA
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
her
Helicobacter pylori Rif1
Pathway
her03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
her00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
C695_01965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
her03400
]
C695_01965
Enzymes [BR:
her01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C695_01965
DNA repair and recombination proteins [BR:
her03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C695_01965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
PriA_C
Zn_ribbon_PriA
PriA_3primeBD
AAA_22
AAA_19
ADDB_N
nSTAND3
PhoH
AAA_7
AAA_30
SLFN-g3_helicase
nSTAND_NTPase5
RecA_N
GpA_ATPase
CobU
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
AFV43202
LinkDB
All DBs
Position
395756..397615
Genome browser
AA seq
619 aa
AA seq
DB search
MFYHLIAPLKNKTPPLTYFSKEQHQKGALVNIPLRNKTLLGVVLEEVSKPSFECLELEKT
PYFLLPFQMELAIFIAQYYSANLSSVLSLFAPFKECDLVGLEKIEPILNILSQTQTNALK
ELQKHSASLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIALTPQMQQRLKRVFKEN
LGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALFLPLKELGLIIVDEEHDFSYKSHQS
PMYNARDLCLYLSHKFPIQVILGSATPSLNSYKRFKDKALVRLKGRYTPTQKNIIFEKTE
RFITPKLLEALQQVLDKNEQAIIFVPTRANFKTLLCQSCYKSVQCPFCSVNMSLHLKTNK
LMCHYCHFSSPIPKICSACQSEVLVGKRIGTMQVLKELESLLEGAKIAILDKDHTSTQKK
LHNILNDFNAQKTNILIGTQMISKGHDYAKVSLAVVLGIDNIIKSNSYRALEEGVSLLYQ
IAGRSARQISGQVFIQSTETDLLENFLEDYEDFLQYELQERCELYPPFSRLCLLEFKHKN
EEKAQQLSLKASQTLSSCLEKGVTLSNFKAPIEKIASSYRYLILLRSKNPLSLIKSVHAF
LKSAPSIPCSVNMDPVDIF
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgttctatcacttaatcgctcctttaaaaaataaaaccccccctttaacctatttttct
aaagagcaacaccaaaaaggagcgttagtcaatatccctttaaggaataaaacgctttta
ggcgtcgtccttgaagaagtttcaaaaccctcttttgaatgcctagagctagaaaaaacc
ccttattttttactcccctttcaaatggagctcgctatttttatcgctcaatattactca
gctaatctttcttcagttttaagcctttttgccccttttaaagaatgcgatttagtgggg
ttagaaaaaattgagcctattcttaatatattaagccaaacgcaaacaaacgctttaaaa
gaattgcaaaaacattcagcaagcttgctctttggcgatacgggtagcgggaaaaccgag
atttatatgcatgcaatcgcccaaactttagagcaaaaaaaaagcgctttattgttggtg
ccagaaatcgctctcacccctcaaatgcaacaacgccttaaaagggtttttaaagaaaat
ttaggcttgtggcatagcaaactctctcaaaatcaaaaaaaacaatttttagaaaagctt
tattcgcaagaaatcaaattagtggtaggcacacgaagcgcgttgtttttaccccttaaa
gagctgggtttaatcattgtagatgaagagcatgacttttcttataaatcccatcaaagc
cctatgtataacgctagggatttatgcttgtatttatctcataaattccctattcaagtg
atcttaggctctgctacgccaagtttgaatagttataaacgctttaaagataaggcttta
gtgcgcttaaaggggcgctacacccccacgcaaaaaaacattatttttgaaaaaaccgag
cgttttatcacgcccaaactcctagaagcgctacaacaagtcctagacaaaaacgagcaa
gccattatttttgtgcctacaagggctaatttcaaaaccttgctgtgccaaagttgttac
aaaagcgttcaatgccccttttgcagcgtgaatatgagcttgcatttaaagaccaacaaa
ctcatgtgccattattgccatttttcaagccctatccctaaaatttgcagcgcgtgtcaa
agcgaagtcttagtgggtaaaaggataggcactatgcaagtgctaaaggaattagagagc
cttttagagggggctaaaatagcgattttagataaagatcacactagcacgcaaaaaaaa
ctccacaatattttaaacgatttcaacgctcaaaaaacgaatatcttaatcggcactcaa
atgataagcaaagggcatgattacgctaaagtgagtttggcggttgttttaggcatagac
aatatcatcaaatctaatagttatagggctttagaagaaggcgtgtcgttactttatcaa
atcgctgggaggagcgctaggcaaatttctggccaagtgttcattcaaagcaccgaaacc
gatctgttagaaaatttcttagaagattatgaagattttttacaatacgaattgcaagaa
aggtgcgaactctacccgcctttttctaggctgtgtttgttggagtttaagcataaaaac
gaagaaaaagcccaacaattgagcctaaaagcctctcaaaccctttcttcgtgtttagaa
aagggcgtaacgctctctaatttcaaagcccccattgaaaaaatcgcttcttcttatcgc
taccttattttattgcgttccaaaaaccctttaagcctaatcaaaagcgtgcatgcgttt
ttaaaatccgcccctagtatcccttgcagcgtgaacatggatcctgtggatattttttaa
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