Helicobacter pylori Rif1: C695_03775
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Entry
C695_03775 CDS
T02317
Name
(GenBank) hypothetical protein
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
her
Helicobacter pylori Rif1
Brite
KEGG Orthology (KO) [BR:
her00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
her03009
]
C695_03775
Enzymes [BR:
her01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
C695_03775
Ribosome biogenesis [BR:
her03009
]
Prokaryotic type
ribosomal protein modification factors
C695_03775
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
Rotavirus_VP3
CLP1_P
Oxidored_nitro
Motif
Other DBs
NCBI-ProteinID:
AFV43540
LinkDB
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Position
complement(789390..790709)
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AA seq
439 aa
AA seq
DB search
MQVKENKQLCLISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQES
IQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQ
FSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVE
NLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLEL
IGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRSTIIVG
HPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIAL
KHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILINDSELTTPLKPGHYT
IAPSEFKDNILLAKVLSPF
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgcaagttaaagaaaacaaacaactctgcttaatttcattaggttgctctaaaaatttg
gtggattcagaggtgatgttaggcaagctttataattacacgctcactaatgacgctaag
agcgctgatgtgattttgatcaacacttgcgggtttattgaaagcgctaaacaagagagt
atccaaaccattctcaacgccgccaaagacaaaaaagagggagcgattttgattgcgagc
gggtgcttgagcgaacgctataaagatgaaatcaaagaattgatccctgaagtggatatt
tttaccggcgtgggggattatgacaagatcgatataatgattgctaaaaaacaaaaccag
ttcagcgagcaagtgtttttaagcgagcattacaacgcacgcatcatcacgggatcgagc
gtgcatgcgtatgtgaaaatttctgagggttgcaatcaaaaatgttctttttgcgctatc
cctagctttaaggggaaattgcaaagcagggaattggactccattttaaaagaagtggaa
aatctcgcgcttaaaggctatacggatatgacttttatcgctcaagactctagctccttt
ttatacgataaggggcaaaaagacggcttgatccagctcattagagcgattgataaacag
caagccttaaagagcgcgcgtattttatatctctacccctctagcaccacgctagagctt
attggcgcgattgaaagttcgcccatttttcaaaattattttgacatgcccatccagcac
atcagcgactccatgctcaaaaagatgcggcgcaactctagccaagcgcaccatttaaag
cttttagatgccatgaagcaggttaaagaaagctttatcagaagcacgatcattgtaggg
catccggaagaaaatgagagcgaatttgaagaattgagcgcgtttttagacgagttccag
tttgatagattgaatatttttgctttcagcgctgaagaaaacacgcatgcctattcttta
gaaaaagtgcctaaaaaaaccatcaacgctcgcatcaaagccttgaataaaatcgcttta
aagcaccaaaaccattcctttaaggctttgttgaataagcccattaaggcgttagtggaa
aataaagagggcgagtatttttacaaagcaagggatctcagatgggcgcctgaagtggat
ggggaaatcttgatcaatgatagcgaactaaccacccccttaaaacccgggcattatacg
attgcacctagcgaatttaaagataatatcctactcgctaaggttttaagccctttttaa
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