Helicobacter pylori Rif1: C695_06285
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Entry
C695_06285 CDS
T02317
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
her
Helicobacter pylori Rif1
Pathway
her03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
her00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C695_06285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
her03019
]
C695_06285
03016 Transfer RNA biogenesis [BR:
her03016
]
C695_06285
Enzymes [BR:
her01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
C695_06285
Messenger RNA biogenesis [BR:
her03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C695_06285
Transfer RNA biogenesis [BR:
her03016
]
Prokaryotic type
tRNA degradation factors
C695_06285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_2
Motif
Other DBs
NCBI-ProteinID:
AFV44025
LinkDB
All DBs
Position
complement(1288552..1290618)
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AA seq
688 aa
AA seq
DB search
MDFITINSSNKTEEFALKQVAKQATSSLLYRLGKTIILASVCVEREPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEN
DLQVSALNAASAALFLAHIAPIKSVSACRIARMDNEFIINPSASLLNQSSLDLFVSGTKE
SLNMIEMRSLGQKLNALEEPLMLEALELAQKSLEETCTLYEEIFTPHQNELFFKESQGIV
FNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVK
KTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDND
AQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGAASRRELGHGNLAKRALETSIKNKE
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDIS
GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIKLEILYQALLQAKEARKHILKIMHEAKE
KIVINFSHLPTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGNKE
RVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQNMDK
CQVVLKEGDSIRCRVISFNKGKIALDLA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggattttatcaccatcaattctagtaacaaaaccgaagagttcgctctcaaacaagtg
gccaaacaagccaccagctctcttttataccgattaggaaaaaccattattttagcgagc
gtgtgcgtggaaagagagcctgtgagtgaagattttctgcctttagtggtgcagttttta
gaaaaatcttatgcagccggaaagatcccgggcggttttgttaaaagagaaggcagggcg
caagattttgaaatcttaacctctaggctcatagacaggactttacgccctttattccct
aaagactaccgctaccctacacagatcactttaatggttttaagccatgatattgaaaat
gacttgcaggtttctgctttaaacgccgcttcagccgctctctttttggcccatatcgct
cctattaaaagcgtgagcgcttgcaggatcgctaggatggataacgaatttatcattaac
cctagcgcaagccttttgaatcaatccagtttggatttgttcgtgtctggaacgaaagag
agtttgaacatgatagaaatgcgctctttggggcaaaaattgaacgctttagaagagcct
ttaatgttagaagctttagaattggctcaaaaaagtttggaagaaacttgcacgctttat
gaagagattttcacgccccaccaaaacgagctgtttttcaaagagagccaaggaatagtc
tttaatgaaaggctgttagatttattgaaaaatcagtattttgatgaaatcatcaaaggc
attgaaagttctgctttgagcgagcgagaaaatgttttcaatgaaattgccagaaaaatc
agtgaagcccactcagaattcagtttagaagaaattgaattgtctttagaaaaagtgaaa
aagactgagataagacgcatgatcattaaggataaaatccgcccggataagcgcgcgtta
gaagaagtgcggcccattttgatagagagcgatttgctccctatggcgcatagctccatt
ttattcactagggggcaaactcaaagcttagtggtaggggttttaggcacggataatgac
gctcaaacccatgagagtttggagcataaagctcccattaaagagcgcttcatgtttcat
tataatttccctcctttctgcgtgggcgaagcgagttctattggcgcggcttcaaggcgt
gaattagggcatgggaatttggctaaaagagccttagaaacgagcattaaaaataaagag
caggtgatacgattggtttctgagattttagaaagcaatggttcaagctcaatggcgagc
gtgtgcgcaggctctttagccctttatgcaagcggtgtggaaatttacgatttagtcgct
ggggtggctatgggcatggtgagcgaagggcaagatcacgctattttaagcgatattagc
ggcttagaagacgcagaaggcgatatggattttaagattgctgggaatttagaaggcatt
acggccatgcaaatggataccaaaatgagcggtatcaagctagaaattttataccaagcc
ttactccaagccaaagaagcacggaaacatattttaaaaatcatgcatgaagcgaaagaa
aagattgtgatcaatttttcccatttgcccacaacggagatttttaatgtcgcacccgat
aaaattgtagaaattatcggtcaaggggggcgtgtgattaaagagatagtagaaaagttt
gaagttaaaattgatttgaacaaaccgagcggtgaagtgaaaatcatggggaataaagag
cgcgttttaaagactaaggaatttattttaaactacttgcattctttagatcaagaattg
gagcaatacgctattgatgaggtattagaagctcaagtgaaacgaatcgtggattttggg
gcgtttttaagcttgcctaaggggggcgaaggcttgttaagaaagcaaaacatggacaag
tgtcaagtggttttaaaagaaggcgatagcatcaggtgtagggtgattagcttcaataag
ggtaaaatcgctttagatttggcttaa
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