Helicobacter pylori Rif1: C695_06960
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Entry
C695_06960 CDS
T02317
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
her
Helicobacter pylori Rif1
Pathway
her03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
her00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C695_06960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
her03400
]
C695_06960
Enzymes [BR:
her01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
C695_06960
DNA repair and recombination proteins [BR:
her03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C695_06960
Prokaryotic type
C695_06960
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AFV44160
LinkDB
All DBs
Position
complement(1407196..1407897)
Genome browser
AA seq
233 aa
AA seq
DB search
MKLFDYAPLSLAWREFLQSEFKKPYFLEIEKRYLEALKIPKTIFPKSSNLFYALNLTPPC
AVKIILLGQDPYHSTYLENDQELPVAMGLSFSVEKNAPIPPSLKNIFKELHANLGVPVPC
CGDLSAWAKRGMLLLNAILSVEKNQAASHQYIGWEAFSDQILMRLFETTAPLIVVLLGKV
AQKKIALIPKNKHIIITAPHPSPLSRGFLGSGVFTSVQKAYREVYRKDFDFSL
NT seq
702 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttttgactacgctcctttgagtttggcttggcgggagtttttgcaaagcgaa
tttaaaaagccttattttttagaaatagaaaaacgctacctagaagccctaaaaatccct
aaaaccattttccctaaaagctctaatctgttttatgcgctcaatctaacgcccccttgt
gcggttaaaatcatccttttagggcaagacccctaccattccacctacctagaaaatgat
caagaattgccggtggcgatggggttgagctttagcgtggaaaaaaacgcccctattcct
ccaagtttaaaaaatatttttaaagaattgcatgcgaatttaggcgtgcctgtgccttgt
tgtggggatttgagcgcatgggctaaaaggggcatgctcttattgaacgccattttaagc
gtggaaaaaaaccaagccgcttcgcaccaatatattggctgggaagcttttagcgatcaa
atactgatgcgcctttttgaaacgaccgcccctttaatcgtggtgttactagggaaagtc
gcccaaaaaaagatcgcgttaatccccaaaaacaaacacatcatcatcacagcccctcac
cctagcccactatctagggggtttttagggagtggggtttttacaagcgttcaaaaagct
tatagagaggtttatcgcaaggattttgattttagtttatga
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