Helicobacter pylori SouthAfrica7: HPSA_01255
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Entry
HPSA_01255 CDS
T01921
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hes
Helicobacter pylori SouthAfrica7
Pathway
hes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPSA_01255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hes03019
]
HPSA_01255
03009 Ribosome biogenesis [BR:
hes03009
]
HPSA_01255
Enzymes [BR:
hes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPSA_01255
Messenger RNA biogenesis [BR:
hes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPSA_01255
Ribosome biogenesis [BR:
hes03009
]
Prokaryotic type
rRNA helicases
HPSA_01255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
AAA_30
AAA_22
Helicase_RecD
TIMELESS
Motif
Other DBs
NCBI-ProteinID:
ADU84275
UniProt:
E8QUQ7
LinkDB
All DBs
Position
250270..251754
Genome browser
AA seq
494 aa
AA seq
DB search
MEFIHDDSQLPIEIDDDTYHKPSFNGLGLKESVLKSVYEAGFTSPSPIQEKAIPAILQGR
DVIAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKT
VCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGF
LDDIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYV
INEHERSEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRA
SIMAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAI
TLVTPLEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFE
PSQLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKPSHKKTHKPEQSHSFKKSHHKDK
HPKTNHYSKKPKRH
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggaatttattcatgatgattcacaactccctatagaaattgatgatgacacctaccat
aagcctagtttcaatggtttaggcttaaaagaatcggttttaaaatccgtttatgaagcc
ggcttcacttccccaagccccattcaagaaaaggccattccggctattttgcaaggtaga
gatgttattgcgcaagcccaaacaggcacaggaaaaaccgccgcttttgctttgcctatc
atcaataaccttaaaaacaaccacaccatagaagccttagtgatcacgcccactagagaa
ttggctatgcaaattagcgatgaaatctttaaattaggcaaacacaccaggactaaaacc
gtgtgcgtgtatggagggcagagcgttaaaaaacaatgcgaatttattaagaaaaaccct
caagtgatgattgccacgccaggaaggttattggatcatttaaaaaacgagcgcatccat
aaatttgtgcctaaagtggtcgtgttagatgaaagcgatgaaatgctggatatggggttt
ttagacgatattgaagagatttttgactaccttcctagcgaagcgcagatcttgcttttt
tcagccacgatgccagagccgattaaaaggctagcggacaagattttagaaaaccccatt
aaaatccatatcgccccttctaatatcactaacactgacattacccaacgcttttatgtg
atcaacgagcatgaaagatctgaagcgatcatgcgccttttagacacccaagcgcctgaa
aaaagcattgttttcacgcgcactaaaaaagaggctgatgaattgcaccaattccttatt
tctaaaaattacaaaagcaccgccttgcatggggatatggatcaaagggatcgacgcgct
tctatcatggcgtttaaaaaaaatgacgctgatgtgttggtggctacagatgtggcgagc
cgtgggctagacattagcggtgtaagccatgtgtttaattaccacttgcccctaaacact
gaaagctacatccatcgcattggcagaaccgggcgagcgggcaaaaaaggcatggcgatt
acgctagttacacctttagaatacaaagagcttttacgcatgcaaaaagaaattgattca
gaaattgagctttttgaaatccccaccattaacgaaaatcaaatcatcaaaaccttgcat
gacgctaaagtgtctgaagggatcattagcctttatgagcagctcaccgaaatttttgaa
ccctctcagttggtgttaaaacttttgagcttgcagtttgaaaccagcaagattggctta
aaccaacaagagattgatgcgattcaaaaccctaaagaaaaaacgccaaaaccctctcac
aaaaaaacgcacaagcctgagcagtcgcactctttcaaaaagagccaccacaaagacaaa
caccctaaaacgaatcattattccaaaaagcccaaacgccattaa
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