Helicobacter pylori SouthAfrica7: HPSA_05890
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Entry
HPSA_05890 CDS
T01921
Name
(GenBank) DNA-directed RNA polymerase subunit beta/beta'
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hes
Helicobacter pylori SouthAfrica7
Pathway
hes03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPSA_05890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hes03021
]
HPSA_05890
03400 DNA repair and recombination proteins [BR:
hes03400
]
HPSA_05890
Enzymes [BR:
hes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPSA_05890
Transcription machinery [BR:
hes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPSA_05890
DNA repair and recombination proteins [BR:
hes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPSA_05890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ADU85147
UniProt:
E8QT33
LinkDB
All DBs
Position
complement(1207286..1215958)
Genome browser
AA seq
2890 aa
AA seq
DB search
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQ
DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSSNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDPQGKVILLAGKKLTSRKIKELKENHLEWVEYPIDILLNRHLA
EPVMVGEEVLLDMLAQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFTADYESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTIKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVMSETIYLTAIQEDSHVIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEK
IIARDSWGAIKANRAGVVEKIDAKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPI
VKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDVFTS
THIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSMYE
EEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASIN
RFTLASLVKKYSKEVQNQYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIASMLEDKTKDFVKALRAKMLEIANAINEKDPLTIHALESCSDEE
LLEYAKDWSKGVKLAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDEMDEDG
MPKPIVIKEDDRPKDFSAFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRY
EDRGFVAQMGGEAIKDLLEEIDLIALLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDKGNIIATSAGRMIIKSILPDFIPTDLWNKPMKKKDIGVL
VDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMTAIAQDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGTKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELSIETVYEEVVVSVKNGEQEAKFVLRRSDIVKPSELAG
VGGKIEGKVYLPYANGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPITQDVYAK
EKGTIKYYVLEANHLERTHGIKKGDMVSEKGLFAVIADDNGREAARHYIARGSEILIDDN
SEVSANSLISKPTTNALSTIATWDPYNTPIIADFKGKVSFVDIIAGVTVAEKEDENTGIT
SLVVNDYIPSGYKPSLFLEGVNGEEVRYFLEPKTSIAISDGSSVEQAEVLAKIPKATVKS
KDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKAIRNKEHIIVTSKDGRSMDYFV
DKGKQILVHADEFVHAGEAMTDGVVSSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIV
LRTLEEDPKN
NT seq
8673 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccaaca
gatttagaagttcctaatttattattattgcaacgagacagctacgattctttcttgtat
tccaaagatggcaaagaaagtgggattgaaaaggtgtttaaatccatttttcctatccaa
gatgagcataaccgcatcactttagagtatgcaggttgcgagtttggcaagtctaaatac
accgttagagaagcgatggagagaggcattacctactctatcccgctcaaaattaaagtg
cgcttgattttgtgggaaaaagacactaagagcggcgaaaagaacggcattaaggacatt
aaagagcaaagcatctttatccgtgaaatccctttaatgacagaacgcacttcatttatt
attaatggagtggagcgcgtggtggtcaatcagctccacagaagccccggtgtgattttt
aaagaagaagaatccagcacttcttcaaacaaactcatttacacaggacaaatcattcct
gataggggttcgtggctgtattttgaatacgattctaaagatgttttatacgctcgtatc
aacaaacgccgtaaagtgcctgttacgattttgtttagagcgatggattatcaaaaacaa
gacattatcaaaatgttctacccgcttgtcaaagtgcgttatgaaaacgataaatatttg
attccgttcgcttcattagacgccaatcaaagaatggaatttgacttgaaagatcctcaa
ggcaaggttatccttttagcgggtaaaaagctcacttcaagaaagattaaagagcttaaa
gaaaaccatttagaatgggtggaataccccatagatattttgctcaatcgtcatttagct
gagcctgttatggtgggagaagaagtcttattggacatgctcgcccagctagataagaat
aaattagaaaaaatccacgatttaggcgtgcaagaatttgtgatcatcaatgatttggct
ttagggcatgacgcttctattatccattctttcacagccgattatgagtctttgaaattg
ctcaagcaaactgaaaaaattgatgatgaaaacgccctagcggcgattcgtatccataag
gttatgaagccaggcgatcctgttacgactgaagtggctaagcagtttgtcaaaaaactc
ttctttgatccagagcgctatgatttgaccatggtaggccgcatgaaaatgaatcataaa
ttaggcttgcatgtgcctgattacatcacgactttaacgcatgaagatattatcaccacc
attaaatacctcatgaagattaaaaacaatcagggcaagattgatgatagggatcactta
ggcaatcgtaggatcagagccgttggggaactattggctaatgaattgcattcaggttta
gtgaaaatgcaaaaaaccattaaagacaagctcactaccatgagtggggcttttgattcg
ctcatgccccatgacttggtcaattctaaaatgatcactagcacgatcatggaatttttc
atgggcggtcagctctcgcaattcatggatcaaactaaccctttgagtgaagttacgcac
aagcgccgcctttcagcactcggtgagggggggttagtcaaagacagggtagggtttgaa
gccagagatgtgcaccccacgcattatggcagaatttgccctattgagactccagaaggt
caaaatatcggtttgatcaacaccctttccactttcacaagagtgaatgatctaggcttt
attgaagccccttataaaaaggttgtagatggcaaggtaatgagcgagacgatttattta
acggctattcaagaagacagccatgtgatcgctcctgcaagcacccccattgatgaagaa
ggcaatattttaggcgatttgattgaaacgcgcgtggaaggcgagatcgttttaaacgaa
aaaagtaaagtaaccttaatggatttaagctccagcatgctagtaggggtggctgcatcg
cttattcctttcttagagcatgatgacgccaaccgcgctttgatggggactaacatgcaa
cgccaagccgtgcctttgttaagaagcgacgctcccattgtaggcacagggattgaaaaa
atcatcgctagggattcttggggtgcgatcaaagccaatcgtgcaggcgtcgtagaaaaa
attgatgctaaaaatatttatattttaggcgaaggcaaagaggaagcctatattgatgcg
tattctttgcaaaaaaacttgcgcaccaaccaaaacaccagcttcaatcaagtccctatc
gttaaagtgggcgataaagtagaagccgggcaaatcatcgctgatggccctagcatggac
agaggcgagttagcgttagggaaaaatgtgcgcgtggcgttcatgccttggaatggctac
aattttgaagacgcgatcgtggtgagtgagcgcatcactaaagacgatgttttcacttcc
acgcacatttatgaaaaagaagtggacgctagagagcttaagcatggcgtggaagaattt
accgctgatattcctgatgtgaaagaagaagcgctcgctcatcttgatgaaagcgggatc
gttaaagtcggcacttacgtgagcgctggcatgattttagtgggcaagacttcccctaaa
ggcgagatcaaaagcacgccagaagaacggcttttaagggctatttttggggataaggcc
gggcatgtggtcaataagagcttgtattgcccccccagtttggaaggcacggtgattgac
gtgaaagtcttcaccaaaaaaggctatgagaaagatgcacgagttttgagcatgtatgaa
gaagaaaaagccaagcttgacatggagcattttgaccgcttgaccatgctcaatagagaa
gaattgttgcgcgtcagctcgctcctttctcaagcgattttagaagagcctttcagccat
aatggtaaggattataaagaaggcgatcaaatccctaaagaagagatcgcttcaatcaat
cgcttcactttggctagtttggtgaaaaaatattctaaagaagtgcaaaaccagtatgaa
atcactaaaaacaatttcttagagcaaaagaaagtcttgggtgaagagcatgaagaaaaa
ctttctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaaggcattgtgtctaatattgtgccggttgcggacatgccttataccgctgatggcgag
cctgtggatattgtcttaaaccctttaggcgtgccaagccgtatgaatatcgggcagatt
ttagaaatgcatttaggtttagtgggtaaagagtttggcaaacaaatcgctagcatgcta
gaggataaaaccaaagatttcgtcaaagcattgcgcgctaaaatgctagaaatcgctaac
gctatcaatgaaaaagatcccttaactatccatgcgcttgaaagctgttctgatgaagag
cttttagaatacgcaaaagactggagtaagggcgttaagctcgctatccctgtgtttgaa
ggcatttcgcaagaaaaattttataagttgtttgagttggctaagattgctatggatggc
aaaatggatttatatgacggacgcaccggcgagaaaatgagggagcgcgtgaatgtgggc
tatatgtatatgatcaaactccaccacttggtggatgaaaaagtccatgcccgaagcaca
ggcccttatagtttagtcacgcaccagcccgtgggcggtaaagcgctctttggaggccaa
aggtttggggaaatggaagtgtgggcgttggaagcttatggcgcagcgcacactctaaaa
gaaatgcttaccattaaatccgatgatattaggggtagggagaacgcttatagggctatc
gctaagggcgagcaagtgggtgagagcgaaattcctgagactttctatgttttgactaaa
gaattgcaatcgctcgctttagacattaatatctttggagatgaaatggatgaagacggg
atgcctaaacccattgtcattaaagaagatgacaggcctaaagactttagcgcttttcag
ctcactctagccagccccgaaaaaatccattcgtggagctatggggaagttaaaaaacca
gaaacgatcaattatcgcaccctaaaacccgaacgagacggcttattttgcatgaaaatc
tttggccctactaaagattatgaatgcttgtgcggtaaatacaaaaagcctcgcttcaaa
gatattggcacatgtgaaaaatgcggcgtagcgatcacgcactctaaagtcaggcgtttt
agaatggggcatattgaattggccactcctgtagcgcatatctggtatgtcaattccttg
cctagccgtatcggcacgcttttaggcgttaaaatgaaagacttggagcgcgtgctttat
tatgaagcttatatcgttaaagagccaggcgaagccgcttatgacaatgaaggcactaaa
cttgtaatgaagtatgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagacaggggatttgtggcgcaaatgggcggcgaagcgatcaaggatttattagaagaa
attgatttgatcgctttattgcaaagtttgaaagaagaagtgaaagacactaattcagac
gccaaaaagaaaaaactcatcaagcgtttgaaggtggtagaaagctttttaaattccggt
aacaggcctgaatggatgatgctcacggttttaccagtattgccaccggatttaagaccg
ttagtcgcgctagatggcgggaagtttgcggtcagcgatgtgaatgaattgtatcgtcgt
gttatcaatcgcaaccaacgcttgaaacgcttgatggagcttggagcaccagaaatcatt
gtgcgcaatgaaaaaaggatgttgcaagaagccgtggatgtgctttttgataacggccgc
agcaccaatgcggttaaaggagctaacaagcgccctttaaaatcgctcagcgagatcatt
aaaggcaagcaagggcgtttcaggcaaaaccttttaggtaagcgcgtggatttttcaggc
aggagcgtgattgtcgttgggcctaatcttaaaatggatgaatgcgggttgcctaaaaac
atggcgttggaactcttcaaaccgcatttactatccaagcttgaagaaagaggctatgcc
accacgctcaagcaggctaaacgcatgattgagcaaaaaagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaagggtatccggtgttactcaaccgcgcgcccactttgcacaag
caatccattcaagcgttccacccaaagctgattgacggcaaagcgatccaattgcatccg
ctagtgtgttcagcgtttaatgcggattttgacggagatcaaatggcggtgcatgtgcct
ttaagccaggaagcgatcgctgaatgcaaggtgctgatgctaagctctatgaatattctt
ttgcccgctagcggtaaagccgtagccattcctagccaggatatggttttagggctatat
tacctttctttagaaaagagtggggtcaagggcgagcataagcttttctctagcgtgaat
gaaatcatcaccgctattgacaccaaagaattagacattcatgcaaagattagggttttg
gataaaggcaatattatcgctacgagcgcggggcgcatgatcattaaatccattttgcct
gattttatccctacggatttgtggaataaacccatgaagaaaaaagatattggcgtgctt
gtggattatgtgcataaagtcggcggtattggcattactgcaacctttttggataattta
aaaacgcttggctttaggtatgcgactaaggctggtatctctatctctatggaagatatt
atcacgcccaaagacaagcaaaaaatggtggaaaaagccaaagtagaggtgaaaaaaatc
caacaacaatacgatcaagggttgctcaccgaccaagagcgttacaataaaatcattgac
acttggactgaagtcaatgacaaaatgagtaaagaaatgatgaccgctattgcgcaagat
aaagagggctttaactccatttatatgatggcagatagcggtgcaagggggagcgcggcg
caaatccgtcagctttcagcgatgaggggtcttatgacaaagccggatggcagtatcatt
gaaacgcccattatttctaactttaaagaggggttgaatgttttagaatactttaactcc
acccacggcgctagaaagggcttagcagatacggcgctaaaaaccgccaatgcggggtat
ttgacaagaaaactcattgatgtttcccaaaatgtcaaggtggtgtctgatgattgcggc
acgcatgaagggattgaaatcacggatattgcggtggggagtgagttgattgagccttta
gaagagcgtatttttgggcgcgttttattagaagatgtgatcgatcccattaccaatgaa
atcttgctttatgcggacactttgattgatgaagagggcactaaaaaggtggtggaagcc
gggattaaatccatcacgatccgcaccccagtaacttgtaaagcaccaaagggcgtgtgt
gcgaaatgctatggcttgaatttaggcgaaggcaagatgagctatcctggggaagcggta
ggcgtggtagctgcacaatctattggggagcctggaacgcagctcactttaaggactttc
catgtgggcgggacagcgagcaggagccaagatgagcgcgaaattgtagcgagcaaagaa
ggttttgtgcgtttttataatctcagaacttacacgaataaagagggtaaaaacattatc
gctaaccgccgtaacgcttctatcttggtggtagagcctaaaattaaagcgccttttgat
ggggaattaagcattgaaacggtttatgaagaagtggttgtgagcgtgaaaaatggcgag
caagaagctaaatttgttttaagaagaagcgatattgtcaaaccaagcgaattggctggc
gttggcggcaagattgaaggcaaggtgtatttgccttacgctaatgggcataaggtgcat
aagggggggagcatcgctgacattatccaagagggttggaatgtgcctaatcgcatccct
tatgcgagcgaattgctggttaaggataatgaccccatcacgcaagatgtgtatgcgaaa
gaaaaaggcacgatcaaatactatgttttagaggccaaccatttagagcgcacccatggg
atcaaaaagggcgatatggtgagcgaaaaaggcttgtttgcggttatcgctgatgataat
ggcagggaagccgctcgccattatattgctagaggttctgagattttaattgatgataat
agcgaagtgagcgcgaatagccttatttctaagcccactacaaacgcattaagcacgatt
gcgacatgggatccttacaatacccccattattgcggactttaagggtaaagtgagtttt
gtggatattatcgcaggggttacggtcgctgaaaaagaagacgaaaataccggtatcact
agtttggtggtgaatgattacattccaagcgggtacaaaccaagtttgtttttagagggg
gttaatggcgaagaagtgcgttatttcttagagccaaaaacttctatcgctattagcgat
ggctctagcgtagaacaggctgaagtgttagcaaagatccctaaagcgaccgttaagtct
aaagacattaccggaggtctcccgagggtttcagaattgtttgaagcgagaaaacccaaa
cctaaagatgtggcgatcctttctgaggttgatgggattgtcagctttggtaaggctatc
cgcaataaagaacacatcattgtaacctctaaagatggtcgctccatggattattttgtg
gataaaggcaagcagattttagtgcatgcagacgagtttgtgcatgcaggggaagcgatg
acggatggggtggtttcaagtcatgatattttaaggatcagcggcgaaaaagagctttat
aaatacattgtgagcgaggttcagcaagtgtatcgcagacagggggtaagcattgcggac
aaacacattgaaatcattgtgtctcaaatgctaaggcaagtgcgcatcttagacagtggg
gatagcaagtttattgaaggggatttggtcagtaaaaaactcttcaaagaagaaaacgct
cgtgtgatcgctttaaaaggcgagccagcgattgctgaaccggtgcttttagggatcact
agagcggctattgggagcgatagcatcatttcagcggcctctttccaagaaacgactaaa
gttttaacagaagccagtatcgctatgaaaaaagactttttggaagatttgaaagaaaat
gtggtgttaggaaggatgatccctgtgggaacgggtatgtataagaacaagaaaatcgtt
ttaagaacgcttgaagaggaccctaaaaattga
DBGET
integrated database retrieval system
