Helicobacter pylori SouthAfrica7: HPSA_05955
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Entry
HPSA_05955 CDS
T01921
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hes
Helicobacter pylori SouthAfrica7
Pathway
hes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPSA_05955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hes03019
]
HPSA_05955
03016 Transfer RNA biogenesis [BR:
hes03016
]
HPSA_05955
Enzymes [BR:
hes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HPSA_05955
Messenger RNA biogenesis [BR:
hes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPSA_05955
Transfer RNA biogenesis [BR:
hes03016
]
Prokaryotic type
tRNA degradation factors
HPSA_05955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_2
Motif
Other DBs
NCBI-ProteinID:
ADU85159
UniProt:
E8QT45
LinkDB
All DBs
Position
complement(1224838..1226904)
Genome browser
AA seq
688 aa
AA seq
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MDFITINSVNKTEEFALKQVAKQATSSLLYRLGKTIILASVCVEREPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRIIDRTLRPLFPKDYRYPTQITLMVLSHDIEN
DLQVSALNAASAALFLSHVAPFKSVNACRIARVDNAFIINPSASLLNQSSLDLFVSGTKE
SLNMIEMRSLGQQLNALEEPLMLEALELAQKSLKETCTLYEETFTPYQNELLFKESQGIV
FNERLLDLLKNQYFNEIIKGIESSALSERENVFNEIARKISEAHSEFGLEEIEWSLEKVK
KTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDND
AQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKE
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDIS
GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALLQAKRAREHILKIMHEAKE
KIVINFSHLPMTEIFNVAPDKIIEIIGQGGRVIREIVERFEVKIDLNKPSGEVKIMGNKE
RVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQHMER
CQVALKEGDSIRCRVISFNKGKIALDLA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggattttatcaccatcaattctgttaacaaaaccgaagaattcgccctcaaacaagtg
gccaagcaagccactagctctcttttataccgcttaggaaaaaccatcattttagcgagc
gtgtgtgtagaaagagagcctgtgagcgaagattttttgcctttagtggtgcagttttta
gaaaaatcttatgctgccggtaagattcctggcggttttgttaaacgagaaggtagagcg
caagattttgaaatcttaacttccaggatcatagacaggactttacgccctttattccct
aaagactaccgctaccctacgcaaatcactttaatggttttaagccatgatattgaaaat
gacttgcaagtttctgccttgaacgccgcttcagccgctctttttttatcccatgtggct
ccttttaaaagcgtgaacgcttgcagaattgctagggttgataacgcatttatcattaat
cctagtgcaagccttttgaatcaatccagtttggacttattcgtgtccggcactaaagag
agcttgaacatgatagaaatgcgctctttggggcaacaattaaacgctttagaagagcct
ttaatgttagaagctttagaattagcccaaaaaagtttgaaagaaacttgcacgctttat
gaagaaacttttacgccttatcaaaacgaactcctttttaaagagagtcaagggatagtc
tttaatgaaaggctgttagatttattaaaaaatcagtattttaatgaaatcattaaaggc
attgaaagctctgctttgagcgagcgagaaaatgttttcaatgaaattgctagaaaaatc
agtgaagcccactcagaatttggtttagaagaaattgaatggtctttagaaaaagtgaaa
aaaaccgagatcaggcgcatgatcattaaggataaaatccgcccggacaagcgcgcatta
gaagaagtgcggcccattttgatagagagtgatttgctccctatggcgcatagctctatt
ttattcactagagggcaaactcaaagcctggtcgtaggggttttaggcacggataatgac
gctcaaacccatgagagtttggagcataaagcccctataaaagaacgcttcatgttccat
tataatttccctcctttttgcgtgggcgaagcgagttctattggcgcgacttcaaggcgt
gaattagggcatgggaatttagccaaaagagccttagaaacgagcattaaaaataaagag
caggtgatacgattggtttctgagattttagaaagcaatggttcaagctcaatggcgagc
gtgtgcgcaggctctttagccctttatgcaagcggtgtggagatctatgatttagtcgct
ggggtggctatgggcatggtgagtgaagggcaagatcacgccattttaagcgatattagc
ggcttagaagacgcagaaggcgatatggactttaagattgctgggaatttagaaggcatt
acggccatgcaaatggataccaaaatgagcggtatccaattagaaatcttataccaagcc
ttactccaagccaaaagagcgcgagagcatattttaaaaatcatgcatgaagcgaaagaa
aaaattgtgatcaatttttctcatttgcccatgactgaaatttttaatgttgcgccggat
aaaattatagaaattatcggtcaaggggggcgtgtgattagagagatagtagaaaggttt
gaagttaaaattgatttgaacaaaccgagcggtgaagtgaaaatcatggggaataaagag
cgcgttttaaaaactaaagaatttattttaaattatttgcattctttagatcaagaattg
gagcaatacgctattgatgaggtgctagaagctcaagtgaaacgaatcgtggattttggg
gcgtttttaagcctgcctaagggaggcgaaggcttgttgagaaagcaacacatggagagg
tgtcaagtggctttaaaagaaggcgatagcattcggtgcagggtcattagcttcaataag
ggtaaaatcgccttggatttggcttaa
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