Helicobacter pylori Puno135: HPPN135_00445
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Entry
HPPN135_00445 CDS
T01920
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
heu
Helicobacter pylori Puno135
Pathway
heu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
heu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPPN135_00445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
heu03021
]
HPPN135_00445
Transcription machinery [BR:
heu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPPN135_00445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
MCR_beta_N
WYL_3
Sigma70_r4_2
HTH_25
SieB
DUF1687
Motif
Other DBs
NCBI-ProteinID:
AEN17803
LinkDB
All DBs
Position
complement(87176..89194)
Genome browser
AA seq
672 aa
AA seq
DB search
MKKKANEEKAPKKAKAEAAQENKTKENNKAKESKIKEAKTKESKIKETKAKEPVPVKKLS
FNEALEELFANSLSDCVSYESIIQISAKVPTLAQVKKIKELCQKYQKKLVSSSEYAKKLN
AIDKIKKTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSKDEEI
ELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDENSVSDSK
KDDDSEEDEENEERKKVVSEKDRKRVEKVQESFKALDKAKKEWLKALEAPVDEKEDELVR
LLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLPLFNDAL
IANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLDPNKLKEIL
EQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHE
KGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEV
VAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKA
QIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSP
QYGRILRNYLRI
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaaagctaacgaagaaaaagccccaaaaaaagccaaagcagaagccgcacaa
gaaaataaaactaaagaaaacaataaagccaaagagagcaaaattaaagaagctaaaacc
aaagaaagcaaaattaaagaaactaaagcgaaagaacctgttcctgttaaaaagcttagt
ttcaatgaagcgttagaagaattgttcgctaattccttaagcgattgcgtttcttatgag
tctatcatccaaatcagcgcgaaagtccccactctagcccaagtcaaaaaaatcaaagaa
ttgtgccaaaaataccaaaagaaattagtcagctcttcagaatacgctaaaaaactcaat
gcgattgacaagattaaaaaaactgaagaaaagcaaaaagttttagatgaagaattagaa
gatggctatgactttttgaaagaaaaggattttttagagtggagcagaagcgatagcccg
gtgcgcatgtatttgcgcgagatgggggatataaaacttttaagcaaagatgaagagatt
gaattgagcaagcaaatccgcttgggcgaagacattattttagacgcgatttgctcggtg
ccgtatttgattgattttatctatgcgtataaagacgctttaatcaatcgtgaaagaagg
gttaaagagctttttaggagctttgatgatgacgatgaaaatagcgtgagcgattctaaa
aaagatgacgacagcgaagaagatgaagaaaacgaagaaaggaaaaaagtcgtttctgaa
aaagacaggaagcgtgtagaaaaggttcaagaaagctttaaagccctagataaggctaaa
aaagaatggctcaaagcccttgaagcccctgtagatgaaaaagaagatgaattggtgcgt
ttattgaccctggcttacaaacgccaaacgctcaaagacagactctatgacttagagcct
accagcaaactgattaatgaattagtcaaaacgatggaaaccactttaaaaagtggcgat
gggtttgaaaaagagttgaaacgcttggaatacaaactgcccttattcaatgacgccctg
atcgcaaaccataaaaaaatccttgctaatatcactaacatgactaaagaagatattatc
gctcaagtgccagaagcgactatggtgagcgtgtatatggatcttaaaaagctttttttg
actaaagaagcgagcgaagagggctttgatttagaccctaacaaactaaaagaaatttta
gagcaaatcaagagagggaaattgatttccgatcgcgctaaaaacaaaatggctaaatcc
aatttaaggttggtggtgagcatcgctaaacgattcacgagcagaggcttgccattcttg
gatttgattcaagagggtaatatcggcttgatgaaagcggtggataagtttgagcatgaa
aagggcttcaagttttctacctatgcgacctggtggatcaaacaagctatcagcagagcc
atagccgatcaagcccgcactatccgcatccccattcacatgattgacacgattaatcgc
atcaataaagtcatgcgcaaacacattcaagaaaccggcaaagagcctgatttagaagtg
gtggctgaagaagtggggctttcgttagataaagtgaagaatgtgattaaggttactaaa
gagcctatcagtttggaaactccagtcggcaatgatgatgacggcaaatttggggatttc
gtggaagataaaaatatcgttagttccattgatcacatcatgcgagaagatttaaaagcc
caaattgaaagcgttttggatcagttgaatgagcgagaaaaagcggtgattcgcatgcgt
tttgggcttttagacgatgagagcgatcgcactttagaagaaatcggcaaggaattgaat
gttactagagaaagggtgcgccagattgaaagctctgcgattaaaaaattgagaagcccg
caatacgggcgcattttaagaaactatttgcgcatttga
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